New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4787379 | 42 (0.780) | 3 (0.060) | 3/252 | NT | 6.2% | coding (6461/6525 nt) | pvdI | non‑ribosomal peptide synthetase |
? | NC_002947 | = 4787406 | 51 (0.990) | coding (6434/6525 nt) | pvdI | non‑ribosomal peptide synthetase |
TTTTTTCGACCACCTGGCGGCGCTGCTCCAGCGGCATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAG > NC_002947/4787232‑4787525 | ttttttCGACCACCTGGCGGCGCTGCTCCAGCGGCATTGCTTCGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTg < 5:291078/149‑1 (MQ=255) cGACCACCTGGCGGCGCTGCTCCAGCGGCATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCcg < 6:117112/148‑1 (MQ=255) cTGGCGGCGCTGCTCCAGCGGCATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTc > 8:196516/1‑148 (MQ=255) gcgcTGCTCCAGCGGCATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGcc < 4:11880/149‑1 (MQ=255) cGGCATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTttgcccaggcgctggaaggcgcgggccaggcc < 1:103979‑M1/149‑33 (MQ=255) aTTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCa < 3:161076/149‑1 (MQ=255) aaaCGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGgtg < 5:286881/149‑1 (MQ=255) aaCGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGgtgt < 2:35470/149‑1 (MQ=255) cGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGttt < 7:196516/149‑1 (MQ=255) gCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCg > 1:195247/1‑145 (MQ=255) cgctGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCACTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGAt < 8:76302/146‑1 (MQ=255) cGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGAt < 1:289036/149‑1 (MQ=255) tGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATc > 8:173853/1‑149 (MQ=255) cGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTAGAAGATGATACTGATCgg > 6:338925/1‑149 (MQ=255) ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCat < 7:104854/144‑1 (MQ=255) ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCat > 8:104854/1‑144 (MQ=255) ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGa > 3:34942/1‑149 (MQ=255) ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGa > 5:263117/1‑149 (MQ=255) tgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTttgcccaggcgctggaaggcgcgggccaggc > 8:165552‑M1/1‑73 (MQ=255) tgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTttgcccaggcgctggaaggcgcgggccaggc < 7:165552‑M1/104‑32 (MQ=255) aTTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGccc > 2:124928/1‑148 (MQ=255) ccTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTg < 4:34942/149‑1 (MQ=255) tCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGtt > 6:323035/1‑149 (MQ=255) aGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGtt < 2:195247/147‑1 (MQ=255) attcattcATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGAGCCTGGGCAAATGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATAGATGCCCAGTTGGCTGTTGATAGGt > 5:37691/1‑149 (MQ=255) attcatCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGAt < 7:204505/123‑1 (MQ=255) attcatCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGAt > 8:204505/1‑123 (MQ=255) attcatCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTGTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTga > 3:206463/1‑147 (MQ=255) atcaGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGc > 8:137099/1‑149 (MQ=255) tcaGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGcc > 2:233523/1‑149 (MQ=255) aGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTg > 7:179285/1‑149 (MQ=255) aGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTg < 8:179285/149‑1 (MQ=255) gttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTgg < 1:233523/149‑1 (MQ=255) gttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTgg > 1:330432/1‑149 (MQ=255) ttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTgg < 1:124928/148‑1 (MQ=255) ttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTcgg > 1:69347/1‑149 (MQ=255) ttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGAt > 2:286846/1‑129 (MQ=255) gCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGGCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGa < 5:338925/149‑1 (MQ=255) ttcttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccac > 2:251105/1‑149 (MQ=255) ttcttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccac > 1:178233/1‑149 (MQ=255) cttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccacc > 7:184912/1‑148 (MQ=255) cttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccacc < 7:137099/148‑1 (MQ=255) cGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCa < 7:173853/147‑1 (MQ=255) cGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAg < 5:323035/148‑1 (MQ=255) tCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTc > 7:244747/1‑148 (MQ=255) tCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTc > 3:305698/1‑148 (MQ=255) ggCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAaggccctgaccgaagaaggcctcgccggtatcgaacaactgatgaatgaattgactgaggcttgaaatggacaagacaaccgcagaacgcatcgccagacgtttcgtagcaatgccg < 1:103979‑M2/149‑118 (MQ=255) gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAaggccctgaccgaagaaggcctcgccggtatcgaacaactgatgaatgaattgactgaggcttgaaatggaca < 7:165552‑M2/104‑74 (MQ=255) gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAaggccctgaccgaagaaggcctcgccggtatcgaacaactgatgaatgaattgactgaggcttgaaatggaca > 8:165552‑M2/1‑31 (MQ=255) gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaa < 7:288046/149‑1 (MQ=255) gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaa < 4:305698/149‑1 (MQ=255) ccTGGCCCGCGCCTTCCAGCGCCTGTGCAAAGTCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaag < 6:37691/149‑1 (MQ=255) ccTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGACTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaag > 7:245723/1‑149 (MQ=255) | TTTTTTCGACCACCTGGCGGCGCTGCTCCAGCGGCATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAG > NC_002947/4787232‑4787525 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |