New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4787379	42 (0.780)	3 (0.060)	3/252	NT	6.2%	coding (6461/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	= 4787406	51 (0.990)					coding (6434/6525 nt)	pvdI	non‑ribosomal peptide synthetase

ATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGC  >  NC_002947/4787267‑4787553                                                                                                                                            |                                                                                                                                                    aTTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCa                                                                                                                                            <  3:161076/149‑1 (MQ=255)          aaaCGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGgtg                                                                                                                                   <  5:286881/149‑1 (MQ=255)           aaCGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGgtgt                                                                                                                                  <  2:35470/149‑1 (MQ=255)             cGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGttt                                                                                                                                <  7:196516/149‑1 (MQ=255)                   gCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCg                                                                                                                              >  1:195247/1‑145 (MQ=255)                    cgctGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCACTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGAt                                                                                                                         <  8:76302/146‑1 (MQ=255)                    cGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGAt                                                                                                                         <  1:289036/149‑1 (MQ=255)                              tGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATc                                                                                                               >  8:173853/1‑149 (MQ=255)                                cGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTAGAAGATGATACTGATCgg                                                                                                             >  6:338925/1‑149 (MQ=255)                                        ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCat                                                                                                          >  8:104854/1‑144 (MQ=255)                                        ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCat                                                                                                          <  7:104854/144‑1 (MQ=255)                                        ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGa                                                                                                     >  5:263117/1‑149 (MQ=255)                                        ttgtcCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGa                                                                                                     >  3:34942/1‑149 (MQ=255)                                              aTTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGccc                                                                                                >  2:124928/1‑148 (MQ=255)                                                      ccTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTg                                                                                       <  4:34942/149‑1 (MQ=255)                                                        tCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGtt                                                                                     >  6:323035/1‑149 (MQ=255)                                                          aGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGtt                                                                                     <  2:195247/147‑1 (MQ=255)                                                               attcattcATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGAGCCTGGGCAAATGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATAGATGCCCAGTTGGCTGTTGATAGGt                                                                              >  5:37691/1‑149 (MQ=255)                                                                   attcatCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGAt                                                                                                    >  8:204505/1‑123 (MQ=255)                                                                   attcatCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGAt                                                                                                    <  7:204505/123‑1 (MQ=255)                                                                   attcatCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTGTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTga                                                                            >  3:206463/1‑147 (MQ=255)                                                                       atcaGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGc                                                                      >  8:137099/1‑149 (MQ=255)                                                                        tcaGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGcc                                                                     >  2:233523/1‑149 (MQ=255)                                                                          aGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTg                                                                   >  7:179285/1‑149 (MQ=255)                                                                          aGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTg                                                                   <  8:179285/149‑1 (MQ=255)                                                                           gttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTgg                                                                  <  1:233523/149‑1 (MQ=255)                                                                           gttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTgg                                                                  >  1:330432/1‑149 (MQ=255)                                                                            ttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTgg                                                                  <  1:124928/148‑1 (MQ=255)                                                                            ttgttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTcgg                                                                 >  1:69347/1‑149 (MQ=255)                                                                               ttCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGAt                                                                                  >  2:286846/1‑129 (MQ=255)                                                                                         gCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGGCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGa                                                    <  5:338925/149‑1 (MQ=255)                                                                                                 ttcttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccac                                            >  2:251105/1‑149 (MQ=255)                                                                                                 ttcttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccac                                            >  1:178233/1‑149 (MQ=255)                                                                                                   cttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccacc                                           >  7:184912/1‑148 (MQ=255)                                                                                                   cttcGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGaccacc                                           <  7:137099/148‑1 (MQ=255)                                                                                                      cGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCa                                         <  7:173853/147‑1 (MQ=255)                                                                                                      cGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAg                                        <  5:323035/148‑1 (MQ=255)                                                                                                         tCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTc                                     >  7:244747/1‑148 (MQ=255)                                                                                                         tCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTc                                     >  3:305698/1‑148 (MQ=255)                                                                                                             ggCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAaggccctgaccgaagaaggcctcgccggtatcgaacaactgatgaatgaattgactgaggcttgaaatggacaagacaaccgcagaacgcatcgccagacgtttcgtagcaatgccg                                <  1:103979‑M2/149‑118 (MQ=255)                                                                                                              gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAaggccctgaccgaagaaggcctcgccggtatcgaacaactgatgaatgaattgactgaggcttgaaatggaca                                                                            <  7:165552‑M2/104‑74 (MQ=255)                                                                                                              gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAaggccctgaccgaagaaggcctcgccggtatcgaacaactgatgaatgaattgactgaggcttgaaatggaca                                                                            >  8:165552‑M2/1‑31 (MQ=255)                                                                                                              gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaa                               <  7:288046/149‑1 (MQ=255)                                                                                                              gCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaa                               <  4:305698/149‑1 (MQ=255)                                                                                                               ccTGGCCCGCGCCTTCCAGCGCCTGTGCAAAGTCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaag                              <  6:37691/149‑1 (MQ=255)                                                                                                               ccTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGACTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAaagaag                              >  7:245723/1‑149 (MQ=255)                                                                                                                    cccGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTgtc                         <  3:203073/149‑1 (MQ=255)                                                                                                                    cccGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTgtc                         <  6:263117/149‑1 (MQ=255)                                                                                                                       gcgcCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTgtcgtc                      <  1:251105/149‑1 (MQ=255)                                                                                                                           cTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGc                  >  5:141180/1‑149 (MQ=255)                                                                                                                            ttCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGcc                 >  7:68702/1‑149 (MQ=255)                                                                                                                               cAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGa              >  1:151935/1‑149 (MQ=255)                                                                                                                                aGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGAc             <  2:330432/149‑1 (MQ=255)                                                                                                                                 gcgcCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGAcc            >  8:36326/1‑149 (MQ=255)                                                                                                                                  cgcCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGAccc           <  8:244747/149‑2 (MQ=255)                                                                                                                                         gCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATTCGTGAGAGGGCCTGGGCCGCTAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGAt    <  5:140852/149‑1 (MQ=255)                                                                                                                                           aaaGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATgc  >  2:182803/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                    ATTGCTACGAAACGTCTGGCGATGCGTTCTGCGGTTGTCTTGTCCATTTCAAGCCTCAGTCAATTCATTCATCAGTTGTTCGATACCGGCGAGGCCTTCTTCGGTCAGGGCCTGGCCCGCGCCTTCCAGCGCCTGGGCAAAGGCCCGCAGAACCGGTGTTTCGAAGATGAGACGGATCGGCATATCGATGCCCAGTTGGCTGTTGATACGTGAGAGGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGC  >  NC_002947/4787267‑4787553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.