New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4832391 =	38 (0.710)	4 (0.080)	4/252	NT	10.0%	coding (800/1014 nt)	pvdY	hydroxyproline acetylase
	?	NC_002947	4832416 =	36 (0.700)					coding (775/1014 nt)	pvdY	hydroxyproline acetylase

TGGAAAGTCGAACTCCTTGTCGCAATGGAAACATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAA  >  NC_002947/4832243‑4832534                                                                                                                                                     |                                                                                                                                                 gacccgcatacgttgacgttgatcggttgtttcgatgacgagccgtttgcctacttcgaggcgtactgggccaaggaggaccgcattgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagag                                                                                                                                                  >  6:15358‑M1/149‑149 (MQ=255)       gTCGAACTCCTTGTCGCAATGGAAACATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTTCGAGGGTCATCCAGGAAAAGGTAGTGCACAAAAGCAGATAGCCAGCTggagatcg                                                                                                                                            >  6:106830/1‑143 (MQ=255)                cTTGTCGCAATGGAAACATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGcc                                                                                                                                   >  8:98078/1‑149 (MQ=255)                      gCAATGGAAACATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGt                                                                                                                             <  8:307009/149‑1 (MQ=255)                        aaTGGAAACATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTgg                                                                                                                           <  8:35173/149‑1 (MQ=255)                             aaaCATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCa                                                                                                                                               <  1:152707/124‑1 (MQ=255)                             aaaCATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCa                                                                                                                                               >  2:152707/1‑124 (MQ=255)                                     gTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTc‑ccc                                                                                                             >  7:192073/1‑148 (MQ=255)                                     gTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑cca                                                                                                             >  5:282155/1‑149 (MQ=255)                                        gTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCGGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑ccac                                                                                                            >  1:47978/1‑147 (MQ=255)                                         tGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAg                                                                                                         <  3:136102/149‑1 (MQ=255)                                            aTGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCa                                                                                                       >  2:252143/1‑148 (MQ=255)                                                    aaTCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATAc                                                                                              <  8:192073/149‑1 (MQ=255)                                                       catcTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGctctcc                                                                                                                     >  2:123604/1‑124 (MQ=255)                                                       catcTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGctctcc                                                                                                                     <  1:123604/124‑1 (MQ=255)                                                        atcTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACg                                                                                          <  6:282155/149‑1 (MQ=255)                                                           ttGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTc                                                                                       >  7:213078/1‑149 (MQ=255)                                                                   gTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCa                                                                                <  2:47978/148‑1 (MQ=255)                                                                       gcgcgcGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGc                                                                           >  6:7302/1‑149 (MQ=255)                                                                       ccaaggaggaccgcattgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctctc                                                                                                                      <  6:304947‑M1/29‑1 (MQ=255)                                                                       ccaaggaggaccgcattgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctctc                                                                                                                      >  5:304947‑M1/79‑107 (MQ=255)                                                                            cgGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGt                                                                      <  1:252143/149‑1 (MQ=255)                                                                             ggCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCg                                                                         <  5:188353/145‑1 (MQ=255)                                                                             ggCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCg                                                                         >  6:188353/1‑145 (MQ=255)                                                                              gCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCggg                                                                       >  3:314607/1‑146 (MQ=255)                                                                              gCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAg                                                                    <  1:313422/149‑1 (MQ=255)                                                                                  ggCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAgg                                                                <  4:41546/149‑1 (MQ=255)                                                                                     caccacCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAggggg                                                             <  6:140039/149‑1 (MQ=255)                                                                                     attgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctc                                                                                                                        >  1:170993‑M1/65‑91 (MQ=255)                                                                                     attgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctc                                                                                                                        <  2:170993‑M1/27‑1 (MQ=255)                                                                                      accaccCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAggggg                                                             >  7:287935/1‑148 (MQ=255)                                                                                        caccCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATAcc                                                                                             >  4:176810/1‑114 (MQ=255)                                                                                          cccGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATg                                                        >  1:314176/1‑149 (MQ=255)                                                                                             gCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCgg                                                     >  8:22129/1‑149 (MQ=255)                                                                                               tGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTTGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGtc                                                   <  8:213078/149‑1 (MQ=255)                                                                                                 tgTGCGCGGGTCATCCAGGAAAAGGTAGTGAACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACTGTCGTAGTCATCTGCCGGGTAGAAGGGGGCAATGCGGtc                                                   <  7:37226/146‑1 (MQ=255)                                                                                                      gcgGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTg                                            <  8:287935/149‑1 (MQ=255)                                                                                                        gggTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGc                                          >  2:117785/1‑149 (MQ=255)                                                                                                        gggTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGc                                          <  7:98078/149‑1 (MQ=255)                                                                                                                         gTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAg                          >  5:265580/1‑148 (MQ=255)                                                                                                                               cACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTCACCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCACGAAGTAGGc                     >  1:263631/1‑148 (MQ=255)                                                                                                                               cACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCa                    <  5:7302/148‑1 (MQ=255)                                                                                                                                aCCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCaaa                  >  7:222297/1‑149 (MQ=255)                                                                                                                                aCCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCaaa                  >  8:77043/1‑149 (MQ=255)                                                                                                                                  cAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACg                >  4:229732/1‑149 (MQ=255)                                                                                                                                  cAACCCCGATAGCCAGCTGGCCACCGTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACg                <  4:196206/149‑1 (MQ=255)                                                                                                                                                aGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGaaa  <  6:265580/149‑1 (MQ=255)                                                                                                                                                     GCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGa                                                                                                 >  4:179556‑M1/1‑49 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TGGAAAGTCGAACTCCTTGTCGCAATGGAAACATTGGTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAA  >  NC_002947/4832243‑4832534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.