New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4832391 =	38 (0.710)	4 (0.080)	4/252	NT	10.0%	coding (800/1014 nt)	pvdY	hydroxyproline acetylase
	?	NC_002947	4832416 =	36 (0.700)					coding (775/1014 nt)	pvdY	hydroxyproline acetylase

GTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTC  >  NC_002947/4832279‑4832563                                                                                                                                          |                                                                                                                                                     gTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTc‑ccc                                                                                                                                          >  7:192073/1‑148 (MQ=255) gTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑cca                                                                                                                                          >  5:282155/1‑149 (MQ=255)    gTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCGGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑ccac                                                                                                                                         >  1:47978/1‑147 (MQ=255)     tGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAg                                                                                                                                      <  3:136102/149‑1 (MQ=255)        aTGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCa                                                                                                                                    >  2:252143/1‑148 (MQ=255)                aaTCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATAc                                                                                                                           <  8:192073/149‑1 (MQ=255)                   catcTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGctctcc                                                                                                                                                  <  1:123604/124‑1 (MQ=255)                   catcTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGctctcc                                                                                                                                                  >  2:123604/1‑124 (MQ=255)                    atcTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACg                                                                                                                       <  6:282155/149‑1 (MQ=255)                       ttGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTc                                                                                                                    >  7:213078/1‑149 (MQ=255)                               gTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCa                                                                                                             <  2:47978/148‑1 (MQ=255)                                   gcgcgcGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGc                                                                                                        >  6:7302/1‑149 (MQ=255)                                   ccaaggaggaccgcattgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctctc                                                                                                                                                   >  5:304947‑M1/79‑107 (MQ=255)                                   ccaaggaggaccgcattgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctctc                                                                                                                                                   <  6:304947‑M1/29‑1 (MQ=255)                                        cgGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGt                                                                                                   <  1:252143/149‑1 (MQ=255)                                         ggCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCg                                                                                                      >  6:188353/1‑145 (MQ=255)                                         ggCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCg                                                                                                      <  5:188353/145‑1 (MQ=255)                                          gCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCggg                                                                                                    >  3:314607/1‑146 (MQ=255)                                          gCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAg                                                                                                 <  1:313422/149‑1 (MQ=255)                                              ggCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAgg                                                                                             <  4:41546/149‑1 (MQ=255)                                                 caccacCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAggggg                                                                                          <  6:140039/149‑1 (MQ=255)                                                 attgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctc                                                                                                                                                     <  2:170993‑M1/27‑1 (MQ=255)                                                 attgcccccttctacccggccgatgactacgaccgtggtatccatatgctggtgggagaggagaGCCACCTTGTGCGGCCCTCGGTGGctc                                                                                                                                                     >  1:170993‑M1/65‑91 (MQ=255)                                                  accaccCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAggggg                                                                                          >  7:287935/1‑148 (MQ=255)                                                    caccCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATAcc                                                                                                                          >  4:176810/1‑114 (MQ=255)                                                      cccGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATg                                                                                     >  1:314176/1‑149 (MQ=255)                                                         gCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCgg                                                                                  >  8:22129/1‑149 (MQ=255)                                                           tGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTTGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGtc                                                                                <  8:213078/149‑1 (MQ=255)                                                             tgTGCGCGGGTCATCCAGGAAAAGGTAGTGAACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACTGTCGTAGTCATCTGCCGGGTAGAAGGGGGCAATGCGGtc                                                                                <  7:37226/146‑1 (MQ=255)                                                                  gcgGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTg                                                                         <  8:287935/149‑1 (MQ=255)                                                                    gggTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGc                                                                       <  7:98078/149‑1 (MQ=255)                                                                    gggTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGc                                                                       >  2:117785/1‑149 (MQ=255)                                                                                     gTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAg                                                       >  5:265580/1‑148 (MQ=255)                                                                                           cACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTCACCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCACGAAGTAGGc                                                  >  1:263631/1‑148 (MQ=255)                                                                                           cACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCa                                                 <  5:7302/148‑1 (MQ=255)                                                                                            aCCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCaaa                                               >  8:77043/1‑149 (MQ=255)                                                                                            aCCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCaaa                                               >  7:222297/1‑149 (MQ=255)                                                                                              cAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACg                                             >  4:229732/1‑149 (MQ=255)                                                                                              cAACCCCGATAGCCAGCTGGCCACCGTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACg                                             <  4:196206/149‑1 (MQ=255)                                                                                                            aGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGaaa                               <  6:265580/149‑1 (MQ=255)                                                                                                             gagagccaccgagggccgcacaaggtggcTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTgg                                                                        <  6:304947‑M2/78‑1 (MQ=255)                                                                                                             gagagccaccgagggccgcacaaggtggcTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTgg                                                                        >  5:304947‑M2/30‑107 (MQ=255)                                                                                                               gagccaccgagggccgcacaaggtggcTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAAt                                                                                      >  1:170993‑M2/28‑91 (MQ=255)                                                                                                               gagccaccgagggccgcacaaggtggcTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAAt                                                                                      <  2:170993‑M2/64‑1 (MQ=255)                                                                                                                 GCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGa                                                                                                                              >  4:179556‑M1/1‑49 (MQ=255)                                                                                                                         gtgCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGAtcaacg                  >  4:144228/1‑149 (MQ=255)                                                                                                                              gCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCACGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGAtcaacgtcaac             <  2:263631/149‑1 (MQ=255)                                                                                                                               cccTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGAtcaacgtcaacg            >  2:268902/1‑149 (MQ=255)                                                                                                                               cccTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCAGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGAtcaacgtcaacg            >  8:137842/1‑149 (MQ=255)                                                                                                                                         cTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTc  >  6:15358‑M2/2‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                     GTCGTGCATGTAGCCAATCATCTTGCCATTGTCGGCGCGCGGCTCGGCCACCACCCGCTGGGTGCGCGGGTCATCCAGGAAAAGGTAGTGCACCAACGCCGATAGCCAGCTGGCCACCTTGTGCGGCCCTCGGTGGCTCTCCTCTC‑CCACCAGCATATGGATACCACGGTCGTAGTCATCGGCCGGGTAGAAGGGGGCAATGCGGTCCTCCTTGGCCCAGTACGCCTCGAAGTAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTC  >  NC_002947/4832279‑4832563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.