New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5499350	40 (0.740)	4 (0.080)	4/254	NT	8.7%	coding (128/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	= 5499391	46 (0.890)					coding (169/720 nt)	cobK	precorrin‑6x reductase

GGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGCCGGCATCCCGTG  >  NC_002947/5499206‑5499497                                                                                                                                                 |                                                                                                                                                    ggCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCgg                                                                                                                                                 <  1:182476/149‑1 (MQ=255)              tgCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGTGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATg                                                                                                                                    >  1:59780/1‑149 (MQ=255)              tgCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATg                                                                                                                                    <  1:211864/149‑1 (MQ=255)                   tGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGgt                                                                                                                               <  6:295244/149‑1 (MQ=255)                       tGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTc                                                                                                                            >  5:4911/1‑148 (MQ=255)                           cgcATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGTGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAggg                                                                                                                       <  2:59780/149‑1 (MQ=255)                              aTCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCt                                                                                                                    <  7:49907/149‑1 (MQ=255)                                        tGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCgg                                                                                                                                <  4:321815/127‑1 (MQ=255)                                        tGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCgg                                                                                                                                >  3:321815/1‑127 (MQ=255)                                        tGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTac                                                                                                          <  2:76159‑M2/149‑3 (MQ=255)                                             ggggTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTgcg                                                                                                     <  1:166037/149‑1 (MQ=255)                                              gggTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCGAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTgcgc                                                                                                    <  2:93084/149‑1 (MQ=255)                                              gggTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggca                                                                                                    <  1:116678‑M1/149‑50 (MQ=255)                                                 tCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggcattg                                                                                                 <  1:60127‑M1/149‑53 (MQ=255)                                                       aaGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCGTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCgg                                                                                             <  7:64011/147‑1 (MQ=255)                                                          cccTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCACGGCTTCCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCATGACCCGTTACCTGCGCGAAGCCGACAt                                                                                         >  6:158414/1‑148 (MQ=255)                                                            cTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCAc                                                                                      >  6:251208/1‑149 (MQ=255)                                                               gCGATGGCCCGCCAACTCGGGCCTCGACATGTATACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATAACCct                                                                                   >  8:57099/1‑149 (MQ=255)                                                                cGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCctg                                                                                  >  8:171850/1‑149 (MQ=255)                                                                 gATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCctgc                                                                                 <  6:4911/149‑1 (MQ=255)                                                                    ggCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGa                                                                              >  5:297117/1‑149 (MQ=255)                                                                     gCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggcatt                                                                                                  <  6:158735‑M1/128‑52 (MQ=255)                                                                     gCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggcatt                                                                                                  >  5:158735‑M1/1‑77 (MQ=255)                                                                     gCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGAt                                                                             <  1:91905/149‑1 (MQ=255)                                                                     gCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGAt                                                                             <  7:171850/149‑1 (MQ=255)                                                                     gCCCGCCAACTCGGGCCTCGACATGTCTACACCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGAt                                                                             <  8:107892/149‑1 (MQ=255)                                                                       ccGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATc                                                                            >  5:152933/1‑148 (MQ=255)                                                                       ccGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATc                                                                            >  1:200191/1‑148 (MQ=255)                                                                          ccAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGTCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACg                                                                        <  1:76159/149‑1 (MQ=255)                                                                                          aaTGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGTGCTTGCAATGCCAGGTGCGGGTCGGGGGGTATGGCGGTGTCGAGGGCCTTACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGc                                                        <  5:197008/148‑1 (MQ=255)                                                                                             gTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTacctg                                                                                                       <  4:191042‑M2/99‑6 (MQ=255)                                                                                             gTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTacctg                                                                                                       >  3:191042‑M2/1‑94 (MQ=255)                                                                                             gTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCcgc                                                     >  2:81663/1‑149 (MQ=255)                                                                                                         gCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCg                                         >  5:312964/1‑149 (MQ=255)                                                                                                         gCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCg                                         <  1:81663/149‑1 (MQ=255)                                                                                                          ccGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAAt                                               <  2:294315/142‑1 (MQ=255)                                                                                                          ccGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAAt                                               >  1:294315/1‑142 (MQ=255)                                                                                                           cGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGc                                        >  7:260742/1‑148 (MQ=255)                                                                                                            ggTATCGGCCGCGTGCCCAAGTGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCTGGCATCACCCTGCTGATCGACGACACCCACCCCTATGCCGCGCAAATCAGCCGCaa                                      >  6:275629/1‑149 (MQ=255)                                                                                                                    ccGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCCCCCACCCCTATGCCGCGCAAATCAGCCGCAATgccgc                                >  7:226437/1‑147 (MQ=255)                                                                                                                     cgcgTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAg                             >  6:72030/1‑149 (MQ=255)                                                                                                                             ccAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCcgcac                     <  8:260742/149‑1 (MQ=255)                                                                                                                               aGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCTAGCGCcgcacg                    >  2:230041/1‑148 (MQ=255)                                                                                                                                    ttGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGc              >  1:153145/1‑149 (MQ=255)                                                                                                                                      gCAATGCCATGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTTCCTGCGCGAAGCTGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGcc             <  5:324641/148‑1 (MQ=255)                                                                                                                                       cAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagacatgtcgaggcccgagttggcgggccatcgccagggcttcagtga           <  1:60127‑M2/149‑98 (MQ=255)                                                                                                                                       cAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGCCg            <  6:152933/148‑1 (MQ=255)                                                                                                                                       cAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGCCg            <  5:72030/148‑1 (MQ=255)                                                                                                                                        aaTGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagacatgtcgaggcccgagttggcgggc                               <  6:158735‑M2/128‑78 (MQ=255)                                                                                                                                        aaTGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagacatgtcgaggcccgagttggcgggc                               >  5:158735‑M2/1‑51 (MQ=255)                                                                                                                                          tGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagacatgtcgaggcccgagttggcgggccatcgccagggcttcagtgaccc        <  1:116678‑M2/149‑101 (MQ=255)                                                                                                                                            ccAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGCCGGCATc       <  6:297117/148‑1 (MQ=255)                                                                                                                                             cAGGTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagac                                                       <  4:191042‑M1/99‑95 (MQ=255)                                                                                                                                             cAGGTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagac                                                       >  3:191042‑M1/1‑5 (MQ=255)                                                                                                                                             cAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGCCGGCATccc     >  2:256855/1‑149 (MQ=255)                                                                                                                                                gTaacgggtcaggccctcgacaccgccatagcccccgacccgcacctggcattgcaagccctggggcacgcggccgataccggccaggctgtagacatgtcgaggcccgagttggcgggccatcgccagggcttcagtgacccctccca  <  2:76159‑M1/149‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGCCGGCATCCCGTG  >  NC_002947/5499206‑5499497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.