New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5571407 = | 38 (0.710) | 5 (0.100) | 4/236 | NT | 14.7% | intergenic (+29/+112) | queG/yicG | epoxyqueuosine reductase/inner membrane protein |
? | NC_002947 | 5571492 = | 24 (0.500) | intergenic (+114/+27) | queG/yicG | epoxyqueuosine reductase/inner membrane protein |
GGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTT > NC_002947/5571261‑5571553 | tcaatgtgccggcagaacaggcgatgttgctcacactgtttggcggcttcctggtgcgcctgttggcaatccgcttccactgggaaatgcccaagttccactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccatg > 7:4251‑M1/147‑148 (MQ=255) ggCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTtgt < 7:184403/148‑1 (MQ=255) ggCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTtgt < 4:285780/148‑1 (MQ=255) ggCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTtgt < 7:75388/148‑1 (MQ=255) caaggtgccggcagaacaggcgatgttgctcacactgtttggcggcttcctggtgcgcctgttggcaatccgcttccactgggaaatgcccaagttccactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccatgt > 7:161372‑M1/146‑148 (MQ=255) gCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTgg < 3:85281/149‑1 (MQ=255) tgccggcagaacaggcgatgttgctcacactgtttggcggcttcctggtgcgcctgttggcaatccgcttccactgggaaatgcccaagttccactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccaTGTGGGAGc < 7:175274‑M1/9‑1 (MQ=255) cgcCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCgg < 5:13154/149‑1 (MQ=255) gcCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCggg > 4:191855/1‑149 (MQ=255) cccTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGgc < 8:197284/149‑1 (MQ=255) ccTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGgcg > 4:145010/1‑149 (MQ=255) tCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCgg > 5:294279/1‑144 (MQ=255) tCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCgg < 6:294279/144‑1 (MQ=255) cACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGcc > 6:167153/1‑149 (MQ=255) ggTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCa < 3:145010/149‑1 (MQ=255) gAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAaca > 6:208955/1‑149 (MQ=255) aGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAacac < 3:34451/149‑1 (MQ=255) aGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAaca > 4:34451/1‑148 (MQ=255) aGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATgg > 7:189706/1‑149 (MQ=255) cAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCAcc > 3:144526/1‑149 (MQ=255) cGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCt < 5:208955/149‑1 (MQ=255) gtgcgcctgttggcaatccgcttccactgggaaatgcccaagttccactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccaTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGc > 5:54176‑M1/94‑149 (MQ=255) aCGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGgcgcgc > 4:54686/1‑110 (MQ=255) aCGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGgcgcgc < 3:54686/110‑1 (MQ=255) gATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCg < 5:167153/149‑1 (MQ=255) tGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGgt < 5:26317/149‑1 (MQ=255) tCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTc > 7:145976/1‑149 (MQ=255) ttggcaatccgcttccactgggaaatgcccaagttccactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccaTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTcg < 5:222747‑M1/65‑1 (MQ=255) ggAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTcgc < 6:28496/149‑1 (MQ=255) gAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTcgcg > 4:151790/1‑149 (MQ=255) aTTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCgg < 4:144526/148‑1 (MQ=255) tccgcttccactgggaaatgcccaagttccactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccaTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCAc > 6:222747‑M1/78‑149 (MQ=255) aGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTc < 3:191855/149‑1 (MQ=255) gcaagttccaatacaacgaccagcagtgacgcaatttacaagcgcaaaatggcccaTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGTAATGGCACCGGCTTCGCCGGTGTTCGCTGGCAc > 5:141664‑M1/57‑128 (MQ=255) ccaagttcaactacaacgaccagcagtgacgcaatttacaagcgcaacatggcccaTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACACGGAATTGCACCGGCTTCGCCGGTGTTCGCGCGCAc < 6:141664‑M1/72‑1 (MQ=255) ggCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTgcg > 1:195969/1‑149 (MQ=255) gTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTg > 4:221061/1‑148 (MQ=255) gTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGt < 8:189706/149‑1 (MQ=255) gtaGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAAtt < 1:332289/147‑1 (MQ=255) aaTAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAgg > 8:134155/1‑71 (MQ=255) aaTAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAgg < 7:134155/71‑1 (MQ=255) aaTAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCgg > 7:40844/1‑101 (MQ=255) aaTAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCgg < 8:40844/101‑1 (MQ=255) gCGACCAGACTCAGAGCATGCGCCATCCTTGTGGGTGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGTGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCActgc < 3:104437/148‑1 (MQ=255) cTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGGCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGt > 1:340364/1‑149 (MQ=255) agagCATGCGACATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGt < 8:145976/149‑1 (MQ=255) tGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCActgctg < 2:35027/132‑1 (MQ=255) tGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCActgctg > 1:35027/1‑132 (MQ=255) cATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTgcgc > 2:303137/1‑106 (MQ=255) cATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTgcgc < 1:303137/106‑1 (MQ=255) cTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCAttt > 3:105579/1‑149 (MQ=255) | GGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTT > NC_002947/5571261‑5571553 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |