New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5995832 =	44 (0.820)	4 (0.080)	4/248	NT	7.8%	coding (1200/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5995898 =	53 (1.050)					coding (1134/1983 nt)	PP_5252	hypothetical protein

ACCCTGGAAGGCCATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTCCTCGAAGTCGG  >  NC_002947/5995685‑5995980                                                                                                                                                     |                                                                                                                                                     gctgcacagcggtaccgacttcttgcgccacaatggcgcgggcgaaatgctggtgttctctgccgccgacttcgaggacttcctcgagccgcgcccggacctgccgcagaccatggaagaagaactggagccggtggtgcgccacctgg                                                                                                                                                      >  6:162290‑M1/149‑149 (MQ=255) aCCCTGGAAGGCCATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATCGGTTAGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGt                                                                                                                                                     >  7:215878/1‑149 (MQ=255)  cccTGGAAGGCCATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTc                                                                                                                                                    <  7:22554/149‑1 (MQ=255)     cacagcggtaccgacttcttgcgccacaatggcgcgggcgaaatgctggtgttctctgccgccgacttcgaggacttcctcgagccgcgcccggacctgccgcagaccatggaagaagaactggagccggtggtgcgccacctgGTc                                                                                                                                                    >  7:169329‑M1/145‑147 (MQ=255)        aaGGCCATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCAt                                                                                                                                              <  8:116378/149‑1 (MQ=255)          ggCCATGCGGTCCTGGTTGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATgc                                                                                                                                            <  1:313223/149‑1 (MQ=255)          ggCCATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATgc                                                                                                                                            <  7:160388/149‑1 (MQ=255)             cATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGGCTTGACCTTCTCGAACACGTCGAGCATgcgc                                                                                                                                          <  1:204206/149‑1 (MQ=255)                 cGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGa                                                                                                                                      <  5:309564/148‑1 (MQ=255)                         gcgccacaatggcgcgggcgaaatgctggtgttctctgccgccgccttcgaggacttcctcgagccgcgcccggacctgccgcagaccatggaagaagaactggagccggtggtgcgccacctgGTCGAGCATGCGCGTGATCGATTCg                                                                                                                              <  3:236412‑M1/25‑1 (MQ=255)                           tGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTg                                                                                                                           <  4:153900/149‑1 (MQ=255)                             gCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTg                                                                                                                           >  4:229425/1‑147 (MQ=255)                             gCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGt                                                                                                                          <  6:137403/148‑1 (MQ=255)                             gCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTa                                                                                                                         <  2:119702/149‑1 (MQ=255)                              cAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACATGTCGAGCATGCGCGTGAt                                                                                                                                     <  7:299572/136‑1 (MQ=255)                              cAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACATGTCGAGCATGCGCGTGAt                                                                                                                                     >  8:299572/1‑136 (MQ=255)                                    caccGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTg                                                                                                                     >  3:294811/1‑146 (MQ=255)                                    caccGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCg                                                                                                                  >  3:92772/1‑149 (MQ=255)                                       cGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTc                                                                                                                               <  3:191960/133‑1 (MQ=255)                                       cGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTc                                                                                                                               >  4:191960/1‑133 (MQ=255)                                          ccAGCGACCGCACGCGCTCGATTTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCTGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAgg                                                                                                            <  8:215878/149‑1 (MQ=255)                                           cAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATTGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGc                                                                                                           <  8:52150/149‑1 (MQ=255)                                             gcgcACGCACGCGCTCGATGTTCTGCGGGGTGATGGGTTCGTCGTGGTCGAAGAACCAGCGCAGGGCGTTGAATGGAATGGCGCGG‑TTGACCTGCTCGAACACGTCGAGCATGCGCGTGAGCGATTCGTTGTAGGTGGCGTGCAGGCgg                                                                                                         <  8:183733/149‑1 (MQ=255)                                                               ccgccgacttcgaggacttcctcgagccgcgcccggacctgccgcagaccatggaagaagaactggagccggtggtgcgccacctgGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCgctgc                                                                                          >  6:218753‑M1/87‑147 (MQ=255)                                                                 ttCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGc                                                                                                           >  5:77277/1‑127 (MQ=255)                                                                 ttCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGc                                                                                                           <  6:77277/127‑1 (MQ=255)                                                                 gccgacttcgaggacttcctcgagccgcgcccggacctgccgcagaccatcgaagaagaactggagccggtggtgcgccacctgGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGa                                                                                      >  8:247744‑M1/85‑149 (MQ=255)                                                                   cgacttcgaggacttcctcgagccgcgcccggacctgccgcagaccatggaagaagaactggagccggtggtgcgccacctgGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGAcc                                                                                    >  4:236412‑M1/83‑149 (MQ=255)                                                                             aaggTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAGTGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGAGCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGcac                                                                         >  8:224229/3‑149 (MQ=255)                                                                             aTGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGcac                                                                         >  8:187774/1‑149 (MQ=255)                                                                                 tttCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTgg                                                                              <  4:6747/140‑1 (MQ=255)                                                                                 tttCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTgg                                                                              >  3:6747/1‑140 (MQ=255)                                                                                 tttCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCaccacc                                                                     >  6:240965/1‑149 (MQ=255)                                                                                  ttCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCg                                                                    >  3:278861/1‑149 (MQ=255)                                                                                         tGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAg                                                             <  3:229425/149‑1 (MQ=255)                                                                                            tCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGttc                                                          <  4:92772/149‑1 (MQ=255)                                                                                              gaagaaCCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTATGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGttct                                                         <  7:174096/148‑1 (MQ=255)                                                                                                 ctaCCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGttcttc                                                       <  1:122841/145‑1 (MQ=255)                                                                                                      aGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATg                                                >  8:306574/1‑149 (MQ=255)                                                                                                       gggCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATgg                                               >  2:9413/1‑149 (MQ=255)                                                                                                                 ttGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGcacc                                                                        >  3:123032/1‑114 (MQ=255)                                                                                                                 ttGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGcacc                                                                        <  4:123032/114‑1 (MQ=255)                                                                                                                    aatggaatgTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTc                                  >  6:297889/1‑149 (MQ=255)                                                                                                                      tggaatgTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCg                                >  6:20025/1‑149 (MQ=255)                                                                                                                      tggaatgTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCg                                >  7:140241/1‑149 (MQ=255)                                                                                                                                cgG‑TTGACCTTCTCGAACAGGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTc                      <  7:224229/149‑1 (MQ=255)                                                                                                                                cgG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTc                      <  7:187774/149‑1 (MQ=255)                                                                                                                                       aCCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAgg                  >  5:42954/1‑147 (MQ=255)                                                                                                                                         cTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGt              >  8:100583/1‑149 (MQ=255)                                                                                                                                         cTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGt              >  5:175542/1‑149 (MQ=255)                                                                                                                                          ttCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTc             >  8:58206/1‑149 (MQ=255)                                                                                                                                          ttCTCGAACACGTCGAGCATGCGCGTGATCGATTCGATGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCCCCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTc             >  8:230708/1‑149 (MQ=255)                                                                                                                                                aaCACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTCCTCGaa       <  7:55330/149‑1 (MQ=255)                                                                                                                                                aaCACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTCCTCGaa       <  5:240965/149‑1 (MQ=255)                                                                                                                                                     GTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTCCTCGAAGTcgg  <  8:277051‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACCCTGGAAGGCCATGCGGTCCTGGATGGCAATACCACCGCCCAGCGCACGCACGCGCTCGATGTTCTGCGGGGTGATGGTTTCGGCGTGGTCGAAGAACCAGGGCAGGCCGTTGAATGGAATGTCGCGG‑TTGACCTTCTCGAACACGTCGAGCATGCGCGTGATCGATTCGTTGTAGGTGGCGTGCAGGCGGAATGGCCAGCGCTGCTCGACCAGGTGGCGCACCACCGGCTCCAGTTCTTCTTCCATGGTCTGCGGCAGGTCCGGGCGCGGCTCGAGGAAGTCCTCGAAGTCGG  >  NC_002947/5995685‑5995980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.