New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6088213 =	37 (0.690)	5 (0.100)	5/256	NT	11.9%	coding (435/1044 nt)	aphA	acetylpolyamine aminohydrolase
	?	NC_002947	6088266 =	38 (0.730)					coding (488/1044 nt)	aphA	acetylpolyamine aminohydrolase

CACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCGCCATCCTT  >  NC_002947/6088065‑6088354                                                                                                                                                     |                                                                                                                                              acgtcgtcgcggctgtagaagatgtcctgcgtaccgttgccgtggtggtagtcgacgtcaaggatggcgaccttgcgtcggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttc                                                                                                                                               <  4:32431‑M1/1‑1 (MQ=255) acgtcgtcgcggctgtagaagatgtcctgcgtaccgttgccgtggtggtagtcgacgtcaaggatggcgaccttgcgtcggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttc                                                                                                                                               >  3:252493‑M1/149‑149 (MQ=255)  acTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGgcg                                                                                                                                              >  7:252466/1‑149 (MQ=255)  acTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGgcg                                                                                                                                              >  7:2539/1‑149 (MQ=255)    tcgtcgcggctgtagaagatgtcctgcgtaccgttgccgtggtagtaggcgacgtcaaggatggcgaccttgcgtcggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttCGcc                                                                                                                                            >  8:72923‑M1/146‑149 (MQ=255)    tGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTCCCTGGCAGCCCGCCTACAGTGCTGCGCAAGTTGCCCTGCCCGACCAGGCTGCAATTCACCAAgccgcc                                                                                                                                            >  8:309119/1‑149 (MQ=255)    tGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGcc                                                                                                                                            >  7:242866/1‑149 (MQ=255)       gcCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCAt                                                                                                                                         >  1:68749/1‑149 (MQ=255)          aGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGcc                                                                                                                                      <  2:68749/149‑1 (MQ=255)               aaGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGt                                                                                                                                  <  8:242866/148‑1 (MQ=255)                  gaagatgtcctgcgtaccgttgccgtggtggtagtcgacgtcaaggatggcgaccttgcgtcggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttCGCCCATGcc                                                                                                                                      <  3:258434‑M1/10‑1 (MQ=255)                  gaagatgtcctgcgtaccgttgccgtggtggtagtcgacgtcaaggatggcgaccttgcgtcggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttCGCCCATGcc                                                                                                                                      >  4:258434‑M1/132‑141 (MQ=255)                        ggCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCtgtg                                                                                                                        <  3:224316/149‑1 (MQ=255)                         gCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCtg                                                                                                                          <  1:150659/146‑1 (MQ=255)                         gCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCtg                                                                                                                          >  2:150659/1‑146 (MQ=255)                                  gCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCa                                                                                                              <  8:2539/149‑1 (MQ=255)                                    gAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAgg                                                                                                            >  2:98876/1‑149 (MQ=255)                                          ggTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCTCAAGTTGCCCTGACCGCGCAGGGTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCGGTGTGCCGTGCGCCAGGgcagca                                                                                                      <  4:167772/149‑1 (MQ=255)                                                    gTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGc                                                                                            >  7:100891/1‑149 (MQ=255)                                                            aaggatggcgaccttgcgtcggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGa                                                                                     >  7:281501‑M1/90‑148 (MQ=255)                                                             ccGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGAt                                                                                    <  2:324960/148‑1 (MQ=255)                                                                  gcCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGggcgg                                                                              <  8:252466/149‑1 (MQ=255)                                                                    ccctATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGggcggc                                                                             >  1:201434/1‑148 (MQ=255)                                                                       cATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTcc                                                                                                                  <  8:265580/108‑1 (MQ=255)                                                                       cATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTcc                                                                                                                  >  7:265580/1‑108 (MQ=255)                                                                       cATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACt                                                                         >  4:245009/1‑149 (MQ=255)                                                                             cgcgGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATc                                                                   >  4:318232/1‑149 (MQ=255)                                                                                gggTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTg                                                                 >  6:340548/1‑148 (MQ=255)                                                                                ggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGt                                                                                       >  6:106661‑M1/70‑126 (MQ=255)                                                                                ggccttggtcgaggaaggcctgggcggcgatggcggcattattcagatagcagtagccgcccatcacttCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGt                                                                                       <  5:106661‑M1/57‑1 (MQ=255)                                                                                 ggTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGaa                                                               <  8:100891/149‑1 (MQ=255)                                                                                          cAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATgccgc                                                      <  3:245009/149‑1 (MQ=255)                                                                                                 ccTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATcgcc                                               >  8:12721/1‑149 (MQ=255)                                                                                                  cTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATcgccg                                              >  8:73244/1‑149 (MQ=255)                                                                                                  cTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAAAGCCGCCATcgccg                                              >  4:53512/1‑149 (MQ=255)                                                                                                      aGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCgccgcc                                            >  1:18502/1‑147 (MQ=255)                                                                                                           tgcGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCt                                     >  3:32431/1‑149 (MQ=255)                                                                                                                acgTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCAGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCt                                     <  4:171107/142‑1 (MQ=255)                                                                                                                aaGTTGCCCTGACCGCACAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCCCCACGCTGCCGGCGAAGTGATGGGCAGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCttatat                                >  3:171107/1‑145 (MQ=255)                                                                                                                   ttGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGAc                             <  3:318232/149‑1 (MQ=255)                                                                                                                        cTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAgg                        <  5:340548/149‑1 (MQ=255)                                                                                                                         tGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGc                       >  6:159586/1‑149 (MQ=255)                                                                                                                            ccGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGa                    <  2:201434/149‑1 (MQ=255)                                                                                                                               cccAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACg                  >  5:55570/1‑148 (MQ=255)                                                                                                                                      tGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCg          >  1:78395/1‑149 (MQ=255)                                                                                                                                           ttCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCGCCATc     <  6:55570/149‑1 (MQ=255)                                                                                                                                            tCAGCATGGCGCCGATGCCGCGTTCGCCCTGTGCCGTCCGGCAGGGCACCAGGCTGCCGGCGTAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCGCCATc     <  7:309119/148‑1 (MQ=255)                                                                                                                                              aGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCGCCATCCtt  >  6:292147/1‑149 (MQ=255)                                                                                                                                              aGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCGCCATCCtt  <  2:18502/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCAGGCGGCCTACAGTGCTGCGCAAGTTGCCCTGACCGCCCAGGCTGCAATTCAGCAAGGCGCCCATGCCGCGTTCGCCCTGTGCCGTCCGCCAGGGCACCACGCTGCCGGCGAAGTGATGGGCGGCTACTGCTATCTGAATAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCAAGGCCGACGCAAGGTCGCCATCCTT  >  NC_002947/6088065‑6088354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.