New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	942570 =	33 (0.610)	3 (0.060)	3/252	NT	11.2%	coding (3052/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	943829 =	16 (0.310)					coding (1793/18933 nt)	PP_0806	surface adhesion protein

TGAGGCTGAACACGCCGGTCGGGCCGACCACGGCAGTGCCCAGTTCGGTTCCGTCGGCAGCCACGATGCGCACGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTCAGTTCGAT  >  NC_002947/943716‑943974                                                                                                                  |                                                                                                                                                  actgaatcccgcacaagactacggagaactgatgcacgtttccgacatcgatgaggtcggcgtttactcggagcccgcacagatcaccgcgcccgacatcaccgcccctgccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAggg                                                                                                                <  8:141130‑M2/36‑1 (MQ=255)         ccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcctcgctgcccgcacagatcaccgcgcccgacatcaccgcccctgccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAgg                                                                                                                 >  8:53885‑M2/106‑140 (MQ=255)         ccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcctcgctgcccgcacagatcaccgcgcccgacatcaccgcccctgccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAgg                                                                                                                 <  7:53885‑M2/35‑1 (MQ=255)                                                                 gATGCGCACGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCaa                                                <  6:283119/149‑1 (MQ=31)                                                                 gATGCGCACGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCaa                                                <  6:278398/149‑1 (MQ=31)                                                                        aCGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTc                                         <  4:240169/149‑1 (MQ=32)                                                                        aCGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTc                                         >  3:71887/1‑149 (MQ=32)                                                                         cGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTcc                                        <  2:104517/149‑1 (MQ=32)                                                                                 cccGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTc                                <  2:330943/149‑1 (MQ=32)                                                                                 cccGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTc                                >  3:214098/1‑149 (MQ=32)                                                                                   cGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGc                              >  1:174615/1‑149 (MQ=32)                                                                                     gTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCg                            >  3:206729/1‑149 (MQ=32)                                                                                         ggCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTc                                         <  3:246811/132‑1 (MQ=32)                                                                                         ggCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTc                                         >  4:246811/1‑132 (MQ=32)                                                                                            aCGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCtt                     <  5:511/149‑1 (MQ=32)                                                                                              ggCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTtgt                   <  4:71887/149‑1 (MQ=32)                                                                                              ggCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTtgt                   <  7:18979/149‑1 (MQ=32)                                                                                                   gTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCggg              <  3:15265/149‑1 (MQ=32)                                                                                                      aTAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCACCCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGAtt           >  8:111859/1‑149 (MQ=17)                                                                                                        aaCGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGa             <  6:298122/145‑1 (MQ=32)                                                                                                        aaCGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGa             >  5:298122/1‑145 (MQ=32)                                                                                                         aCGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTCAg        <  4:214098/149‑1 (MQ=32)                                                                                                           gCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGTAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTCAGtt      >  7:147613/1‑149 (MQ=17)                                                                                                           gCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCgg               >  2:105168/1‑140 (MQ=32)                                                                                                           gCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCgg               <  1:105168/140‑1 (MQ=32)                                                                                                             tgccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTc          >  7:4029‑M2/6‑143 (MQ=255)                                                                                                             tgccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTc          <  8:4029‑M2/138‑1 (MQ=255)                                                                                                               ccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTCAGTTCGa   <  5:146091‑M2/145‑1 (MQ=255)                                                                                                               ccgTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTCAGTTCGAt  >  2:265952‑M2/4‑149 (MQ=255)                                                                                                                  |                                                                                                                                                  TGAGGCTGAACACGCCGGTCGGGCCGACCACGGCAGTGCCCAGTTCGGTTCCGTCGGCAGCCACGATGCGCACGGTGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCAACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGGATTCAGTTCGAT  >  NC_002947/943716‑943974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.