New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1316945	39 (0.720)	4 (0.080)	4/248	NT	9.1%	coding (363/1989 nt)	PP_1150	membrane protein
	?	NC_002947	= 1316968	43 (0.850)					coding (386/1989 nt)	PP_1150	membrane protein

CGGCCTGTTCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTGGGCGGGCAGGCGCGG  >  NC_002947/1316825‑1317113                                                                                                                                                |                                                                                                                                                     cGGCCTGTTCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTgccgg                                                                                                                                                 <  1:255838‑M2/149‑6 (MQ=255)  ggCCTGTTCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTgccggc                                                                                                                                                >  4:126975‑M2/1‑143 (MQ=255)        ttCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCAtt                                                                                                                                            <  1:79130/147‑1 (MQ=255)        ttCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGa                                                                                                                                          >  5:30324/1‑149 (MQ=255)        ttCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGa                                                                                                                                          >  1:53804/1‑149 (MQ=255)                   ccccGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTg                                                                                                                               >  1:332620/1‑148 (MQ=255)                     ccGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGc                                                                                                                              >  7:40694/1‑147 (MQ=255)                            gTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTc                                                                                                                      >  7:86494/1‑148 (MQ=255)                             tttCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTc                                                                                                                      <  6:245751/147‑1 (MQ=255)                             tttCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCg                                                                                                                     <  5:263188/148‑1 (MQ=255)                                   cTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAg                                                                                                                <  6:30324/147‑1 (MQ=255)                                    ttACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGcc                                                                                                             >  5:274536/1‑149 (MQ=255)                                      aCCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑Gt                                                                                                         >  6:89502/1‑149 (MQ=255)                                       ccTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTg                                                                                                        <  2:277963/149‑1 (MQ=255)                                         ttGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCCCAGCGCCTGGGCCTATGCATTCGTGCTGGCCGGCTACACCGCAGCGAACATCACCTTGCCGGCCATTGACCACCCC‑CTCCAAGAATTCAACCAGCCC‑‑GAgga                                                                                                      >  4:167656/1‑148 (MQ=255)                                            gcgaTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCACCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTc                                                                                                    <  3:167656/148‑1 (MQ=255)                                              gcTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCt                                                                                                 <  5:314130/149‑1 (MQ=255)                                                tttGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTg                                                                                                >  1:24062/1‑148 (MQ=255)                                                                  ccGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCga                                                                                          <  5:245451/136‑1 (MQ=255)                                                                  ccGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCga                                                                                          >  6:245451/1‑136 (MQ=255)                                                                  ccGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTggg                                                                              >  6:137059/1‑148 (MQ=255)                                                                         gTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCt                                                                      <  6:36257/149‑1 (MQ=255)                                                                            cACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCtgt                                                                    <  5:89502/148‑1 (MQ=255)                                                                               ccAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTgg                                                                               <  8:10999/134‑1 (MQ=255)                                                                               ccAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTgg                                                                               >  7:10999/1‑134 (MQ=255)                                                                                        cAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAAcagccag                                                         >  2:265223/1‑147 (MQ=255)                                                                                        cAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCcagca                                                       <  8:40694/149‑1 (MQ=255)                                                                                         aGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCcagcag                                                      >  3:318739/1‑149 (MQ=255)                                                                                              cTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCt                                                 >  2:324545/1‑149 (MQ=255)                                                                                                      aTGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTgg                                         <  2:255838/149‑1 (MQ=255)                                                                                                           ttagTGCTGGACGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGTTATTTTCTGTGCaa                                                                >  6:266808/4‑121 (MQ=255)                                                                                                           ttCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCaa                                                                <  5:266808/121‑1 (MQ=255)                                                                                                               tGCTGGCCGGCTACACCGCAGCGATCATCGCCTTgccggccagcacgaaggcataggcccaggcgctgcgcaactgggtggacgctgcggtacacagcgccagccaaagcgccaaggtaagcagaaacaggccgggggtctgggcgaa                                    <  7:38500‑M2/148‑115 (MQ=255)                                                                                                               tGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCgg                                <  6:306612/149‑1 (MQ=255)                                                                                                                gCTGGCCGGCTACACCGCAGCGATCATCGCCTTgccggccagcacgaaggcataggcccaggcgctgcgcaactgggtggacgctgcggtacacagcgccagccaaagcgccaaggtaagcagaaacag                                                      <  5:72313‑M2/129‑97 (MQ=255)                                                                                                                gCTGGCCGGCTACACCGCAGCGATCATCGCCTTgccggccagcacgaaggcataggcccaggcgctgcgcaactgggtggacgctgcggtacacagcgccagccaaagcgccaaggtaagcagaaacag                                                      >  6:72313‑M2/1‑33 (MQ=255)                                                                                                                  tGGCCGGCTACACCGCAGCGATCATCGCCTTgccggccagcacgaaggcataggcccaggcgctgcgcaactgggtggacgctgcggtacacagcgccagccaaagcgccaaggtaagcagaaacaggccgggggtctgggcgaacagg                                <  7:175030‑M2/149‑119 (MQ=255)                                                                                                                  tGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCCATGGGGCTGGCTGTACCGAGATCTGGCGGGGTATTTTGTGTGCAACCGCCAGCAGTGCCTTGCTATGGCCCATGCggg                               >  1:275272/1‑149 (MQ=255)                                                                                                                  tGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTc                             >  1:53214/1‑149 (MQ=255)                                                                                                                    gCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGa                           <  4:318739/149‑1 (MQ=255)                                                                                                                     ccGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCCTCTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTc                             >  1:74854/1‑147 (MQ=255)                                                                                                                      cGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGagc                         <  2:53804/149‑1 (MQ=255)                                                                                                                       ggCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGagca                        <  3:34174/149‑1 (MQ=255)                                                                                                                               cGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgg                >  2:10268/1‑149 (MQ=255)                                                                                                                               cGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGAGCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCGTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgg                <  7:244989/149‑1 (MQ=255)                                                                                                                                  aGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgggcg             <  2:332620/149‑1 (MQ=255)                                                                                                                                   gCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgggcgg            >  7:103440/1‑149 (MQ=255)                                                                                                                                   gCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgggcgg            <  8:103440/149‑1 (MQ=255)                                                                                                                                     gATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgggcgggc          <  5:137059/149‑1 (MQ=255)                                                                                                                                        catcGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTGGGCGGGCAgg       >  2:79807/1‑149 (MQ=255)                                                                                                                                          tcGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgg                <  8:70776/138‑1 (MQ=255)                                                                                                                                          tcGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTgg                >  7:70776/1‑138 (MQ=255)                                                                                                                                             ccTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTGGGCGGGCAGGCGCgg  >  2:87538/1‑149 (MQ=255)                                                                                                                                             ccTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTGGGCGGGCAGGCGCgg  >  5:175197/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CGGCCTGTTCGCCCAGACCCCCGGCCTGTTTCTGCTTACCTTGGCGCTTTGGCTGGCGCTGTGTACCGCAGCGTCCACCCAGTTGCGCAGCGCCTGGGCCTATGCCTTCGTGCTGGCCGGCTACACCGCAGCGATCATCGCCTTGCCGGCCATTGACCACCCC‑CTGCAAGTATTCGACCAGGCC‑‑GTGGCTCGCTGTACCGAGATCTGCCTGGGTATTTTCTGTGCAACAGCCAGCAGTGCCTTGCTCTGGCCCATGCGGGTCGAGCAGCAACTGGGCGGGCAGGCGCGG  >  NC_002947/1316825‑1317113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.