New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1380487 =	44 (0.820)	5 (0.100)	4/240	NT	12.7%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380526 =	29 (0.590)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met

CGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTC  >  NC_002947/1380378‑1380672                                                                                                                                                      |                                                                                                                                                   actgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTc                                                                                                                                                    >  1:201353‑M1/110‑149 (MQ=255)  ggCTTGGGAGGGTTAAATATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGTGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCt                                                                                                                                                   <  6:333499/149‑1 (MQ=255)     tagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTCGCTTTTACACAGGCGGGGTTTGTTCTGa                                                                                                                                                 >  1:20925‑M1/106‑149 (MQ=255)     tagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGa                                                                                                                                                 <  2:20925‑M1/43‑1 (MQ=255)             gTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATgg                                                                                                                                        <  6:320661/149‑1 (MQ=255)                aaaGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGtt                                                                                                                                      <  4:156544/148‑1 (MQ=255)                  aGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCg                                                                                                                                   <  5:295460/149‑1 (MQ=255)                   gATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACTAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCgg                                                                                                                                  <  8:158260/149‑1 (MQ=255)                   gATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCgg                                                                                                                                  <  1:310119/149‑1 (MQ=255)                       gTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAg                                                                                                                               <  6:202529/148‑1 (MQ=255)                        ttCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGcc                                                                                                                             >  6:286945/1‑149 (MQ=255)                        ttCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGcc                                                                                                                             >  3:270228/1‑149 (MQ=255)                        gcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTc                                                                                                                                                    <  3:249759‑M1/40‑1 (MQ=255)                        gcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTc                                                                                                                                                    >  4:249759‑M1/87‑126 (MQ=255)                           aTCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGa                                                                                                                          <  5:237579/149‑1 (MQ=255)                                   cACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAcc                                                                                                                  >  1:150278/1‑149 (MQ=255)                                     cGACATCTCAAGCCTGCGGGTTGGCATGAGGGGACGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACcga                                                                                                                >  4:295374/1‑149 (MQ=255)                                        cATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACcgacga                                                                                                             <  3:211330/149‑1 (MQ=255)                                              aaGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCg                                                                                                       <  7:236274/149‑1 (MQ=255)                                              aaGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCg                                                                                                       >  6:285734/1‑149 (MQ=255)                                                 ccTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGt                                                                                                    <  7:37382/149‑1 (MQ=255)                                                 ccTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGt                                                                                                    <  5:286945/149‑1 (MQ=255)                                                     cGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTAt                                                                                                 <  2:150278/148‑1 (MQ=255)                                                     cGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTAt                                                                                                 <  4:81138/148‑1 (MQ=255)                                                     cGGGGTGGCTTGATGGGAGGGAATATCGAGGCTACGAAAGTCAGTGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACATTCGGGTTAt                                                                                                 <  4:183930/148‑1 (MQ=38)                                                                gaggggagggAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgacga                                                                                      <  4:270228/148‑1 (MQ=255)                                                                   gggagggaAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGCCGACCTTCGGGTTATGAGCCCGACGAGCTa                                                                                  >  5:266279/1‑149 (MQ=255)                                                                            aaTCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgc                                                                         >  6:302072/1‑149 (MQ=255)                                                                                   gCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATcc                                                                  <  2:87842/149‑1 (MQ=255)                                                                                        gaAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGGGGGAGCCGGATTTGAACCGACGTCCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGt                                                             <  3:295374/149‑1 (MQ=255)                                                                                           aGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAg                                                          >  3:83883/1‑149 (MQ=255)                                                                                               aGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTggg                                                      >  8:35660/1‑149 (MQ=255)                                                                                                 ggAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                                                    >  2:63051/1‑149 (MQ=255)                                                                                                     gTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGAt                                                >  2:194033/1‑149 (MQ=255)                                                                                                       ataAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCACGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTc                                              >  1:31609/1‑149 (MQ=255)                                                                                                          tcagaacaaaccccgcctgtgtaaaagcgagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTa                                            >  1:20925‑M2/45‑149 (MQ=255)                                                                                                           tcagaacaaaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTa                                            <  2:20925‑M2/105‑1 (MQ=255)                                                                                                              gaacaaaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgc                                                               >  4:249759‑M2/41‑126 (MQ=255)                                                                                                              gaacaaaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgc                                                               <  3:249759‑M2/86‑1 (MQ=255)                                                                                                              gaacaaaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgt                                        >  1:201353‑M2/41‑149 (MQ=255)                                                                                                              AACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtg                                       <  4:164741‑M1/149‑1 (MQ=255)                                                                                                                    CCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTTCCAGGCTGCTCCATCCCGCGTCAGTGGTGGGGATTCTACAGTGTGTGGt                                 <  6:77904‑M1/149‑1 (MQ=255)                                                                                                                     CCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGtt                                >  7:270150‑M1/1‑149 (MQ=255)                                                                                                                      CCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGAGTCTACAGTGtgtgggtt                               <  8:306062‑M1/149‑4 (MQ=255)                                                                                                                                      acaGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGt                             <  2:239003/136‑1 (MQ=255)                                                                                                                                      acaGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGt                             >  1:239003/1‑136 (MQ=255)                                                                                                                                      acaGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTCAAgcgc                  >  5:133366/1‑147 (MQ=255)                                                                                                                                            ggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCttt          >  8:38449‑M2/11‑149 (MQ=255)                                                                                                                                                    ttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTc  <  5:77904‑M2/147‑1 (MQ=255)                                                                                                                                                    ttCTGACGAATATGGTTGCGGGACCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGGTACGAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGAttttt   <  7:306062‑M2/146‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCT‑GCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTC  >  NC_002947/1380378‑1380672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.