New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419549	7 (0.130)	19 (0.360)	15/258	NT	58.6%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	20 (0.380)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

CTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTT  >  NC_002947/1419551‑1419783                                                                                      |                                                                                                                                                    agctgcgGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCa                                                                                      <  7:258125/145‑1 (MQ=255)      ccggCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTgaa                                                                                      >  8:258125/3‑142 (MQ=255)              cccGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAt                                                                                                                                      <  4:199449/88‑1 (MQ=255)               ccGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAATGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCAGAAACTGCATCAACGAAGACTc                                                                         >  6:209487/1‑148 (MQ=38)                   tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaaccccccacagtcggc                                                                        <  8:163850‑M2/145‑78 (MQ=255)                   tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaaga                                                                    <  5:172758‑M2/149‑82 (MQ=255)                     ccACAGGTACTGTGCAGTGCGTGACGGCTGTTGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaa                                                                      >  7:163850‑M2/1‑66 (MQ=255)                     ccACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGc                                                                  >  5:35683/1‑149 (MQ=255)                       acaGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGccc                                                                >  3:326890/1‑149 (MQ=255)                          ggTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgctt                                                             >  6:172758‑M2/1‑61 (MQ=255)                           gTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTg                                                             >  1:125004/1‑148 (MQ=255)                                 tgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCt                                                      >  7:179031/1‑149 (MQ=255)                                    aGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGTCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTATATGCGACCGCATCTGCAACTGCATGAACGCCGACTCGACCAGCCCCTGTACCGCTTcc                                                   <  1:135793/149‑1 (MQ=255)                                              ggCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAAGCAAGGTGTGAGGCTCTGTGGGAAAATGCGCCCGCATCTCCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATg                                           >  6:77039/1‑147 (MQ=255)                                                   tggtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACg                                    >  4:64954/1‑149 (MQ=255)                                                     gtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGc                                  >  8:256999/1‑149 (MQ=255)                                                       gACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCt                                >  3:78944/1‑149 (MQ=255)                                                        tacctgTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgct                               >  2:192114‑M2/3‑31 (MQ=255)                                                        tacctgTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaaca                                         >  4:217461‑M2/3‑31 (MQ=255)                                                        tacctgTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaaca                                         <  3:217461‑M2/137‑109 (MQ=255)                                                          ccTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCa                             >  4:268882/1‑149 (MQ=255)                                                           cTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgccaaccgacaacacaacagaacccaccacagtcggcaagacctgcttcaaccaaggcgaaaacaacactcacccgctgtt                            <  6:127010‑M2/149‑122 (MQ=255)                                                           cTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGTGACCGCATCTGCAACTGCATCAACGCCGCCTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCAAGGCCTGCa                             >  3:325313/1‑148 (MQ=255)                                                              tgGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCAc                         <  4:326890/149‑1 (MQ=255)                                                                 gAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgtcaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcat                      >  1:257607‑M2/1‑22 (MQ=255)                                                                  aGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatc                     >  5:98332‑M2/1‑21 (MQ=255)                                                                  aGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATc                     <  4:78944/149‑1 (MQ=255)                                                                   gCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgacaacaacactcatccgctgttccgcatc                     <  4:104445‑M2/148‑129 (MQ=255)                                                                       gCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagcacccaccacagtcggcaacacctgcttctaccaacgccaaaacaaccctcacccgcagttccgcaacgaacc                <  7:78510‑M2/149‑134 (MQ=255)                                                                        cGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCtg               <  6:35683/149‑1 (MQ=255)                                                                         gTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcac                                    <  8:236450‑M2/127‑114 (MQ=255)                                                                         gTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcac                                    >  7:236450‑M2/1‑14 (MQ=255)                                                                           gCCCGCGAAGAGgccagcccaggcaacaaacaatccagggaaacaaaacaatgcccaccgacaactaaaaagaacccaccacagtctgcaagacctgcatctacaaaggcgaaaacaagactcaccccctgttccgcatcgaacccgg             <  1:168682‑M2/148‑137 (MQ=255)                                                                            cccGCGATGAGGCCTGACCTGATAATGCAAGGTGTTAGGCTCTGTGTGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCATCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTgg            <  5:209487/148‑1 (MQ=255)                                                                             ccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttcaaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcat          >  5:127010‑M2/1‑10 (MQ=255)                                                                               gcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcc        <  8:188512‑M2/149‑142 (MQ=255)                                                                               gcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgct                               <  5:304099‑M2/126‑119 (MQ=255)                                                                               gcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgct                               >  6:304099‑M2/1‑8 (MQ=255)                                                                               gcgAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGc                                  <  6:232644/123‑1 (MQ=255)                                                                                  aaGAGgccagcgcaggcaacccagaatcaagggaaacaaatctatgcccaccgaaaacacaacagaacccacctcagtcggcaagacctgcttctaccaaggcgaatacaacactcacccgctgttccgcatcgaaaccggcatccgct     >  2:168682‑M2/1‑5 (MQ=255)                                                                                     agGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGtt  >  8:262469/1‑149 (MQ=255)                                                                                      |                                                                                                                                                    CTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTT  >  NC_002947/1419551‑1419783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.