New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1671421 =	51 (0.950)	4 (0.080)	4/248	NT	8.7%	coding (1468/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	1671465 =	36 (0.710)					coding (1424/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter

GGTTTGGCCCCCAATAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTCCGTCAGCAA  >  NC_002947/1671318‑1671610                                                                                                                                                           |                                                                                                                                                  ggTTTGGCCCCCAATAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGcc                                                                                                                                                  <  8:26501/149‑1 (MQ=255)      gggctcacgacctactttggcaacccggcctcgcagcatgccgacgcccatcttgacctggtcggcctcgggcacttgctgggcctctctcccgccggC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGcc                                                                                                                                                  <  5:113999‑M1/46‑1 (MQ=255)      gggctcacgacctactttggcaacccggcctcgcagcatgccgacgcccatcttgacctggtcggcctcgggcacttgctgggcctctctcccgccggC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGcc                                                                                                                                                  >  6:113999‑M1/99‑144 (MQ=255)      ggCCCCCAATAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCcggcg                                                                                                                                              <  7:160270/148‑1 (MQ=255)       gCCCCCAATAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCcggcgg                                                                                                                                             <  3:135194/148‑1 (MQ=255)        cccccAATAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAAAAATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCcggcgg                                                                                                                                             >  1:113587/1‑147 (MQ=255)             cgacctactttggcaacccggcctcgcagcatgccgacgcccatcttgacctggtcggcctcgggcacttgctgggcctctctcccgccggCTGTGGCCGAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCcggcgg                                                                                                                                             >  7:39839‑M1/92‑149 (MQ=255)              aTAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAgg                                                                                                                                     <  5:295017/149‑1 (MQ=255)              aTAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAgg                                                                                                                                     <  2:89258/149‑1 (MQ=255)               tAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGc                                                                                                                                    <  3:232701/149‑1 (MQ=255)               acctactttggcaacccggcctcgcagcatgccgacgcccatcttgacctggacggcggcgggcccttgcggggccgcgctcccgccggC‑‑‑‑‑‑‑GAAAGCAGGCCGGAACCTGGCGCAGGCCAGGGCATGGATTTCGc                                                                                                                                                   <  5:235312‑M1/45‑1 (MQ=255)                     cccGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGc                                                                                                                               <  1:274050/148‑1 (MQ=255)                     cccGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGc                                                                                                                               <  1:335542/148‑1 (MQ=255)                             gCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGAC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGccc                                                                                                                       >  5:198386/1‑148 (MQ=255)                                 ttCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGc                                                                                                                  >  6:157381/1‑149 (MQ=255)                                     gccgccCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGCGAGAGAGGCCCAGCAACTGCCCGAg                                                                                                                    >  3:70432/1‑143 (MQ=255)                                        gccCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAg                                                                                                           <  2:7266/149‑1 (MQ=255)                                        gccCGGTGCTTGTCGCTACGTTGTATCTCCAGCCCACTCGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTTGCGCACGCCAGGGCATTGATTTAGCCGGCGGGAGAGAGGCCCAGCAATTGCCCGAGGCCGACCAg                                                                                                           >  3:253500/1‑149 (MQ=255)                                            ggTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTc                                                                                                        >  5:67409/1‑148 (MQ=255)                                                cTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGa                                                                                                    <  1:190632/148‑1 (MQ=255)                                                 ttGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAg                                                                                                                    <  5:71593/131‑1 (MQ=255)                                                 ttGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAg                                                                                                                    >  6:71593/1‑131 (MQ=255)                                                   ttCGCTACGTTGTTTCTCCAGACCACTGGCTATCACTAACAGCCTGCTGTGTCC‑‑‑‑‑‑‑TAAATCATTACGGAACCTTGCGCAGTCCAGGGCATTGATTTCGCCTGCGGGAGAGAGGCACAGCAAGTGCCCGAGGCCGACCAGGTCAAGATgg                                                                                                 <  6:261705/147‑1 (MQ=255)                                                   gTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGTGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATgg                                                                                                 <  5:216890/148‑1 (MQ=255)                                                       cTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCCGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATgg                                                                                                 >  5:312105/1‑144 (MQ=255)                                                       cTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCCGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATgg                                                                                                 <  6:312105/144‑1 (MQ=255)                                                          cGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCg                                                                                           <  8:194664/147‑1 (MQ=255)                                                           gttgttTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCa                                                                                        >  6:40980/1‑149 (MQ=255)                                                                            cTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGtt                                                                       <  4:108745/149‑1 (MQ=255)                                                                               gCTAGCACTACCAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGTATCCTTGCGCAGGCCATGGCATTGATTTCGACGGCGTGAGAGAGGCCCAGCAAGAGCCCGAGGACGACCAGGTCAAGCTGGGCGTCGGCATGCTGCTAGGCCGGGTTGc                                                                     <  4:253500/148‑1 (MQ=255)                                                                               gCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGcc                                                                    <  2:169538/149‑1 (MQ=255)                                                                                       gAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAgg                                                            >  2:36378/1‑149 (MQ=255)                                                                                             ccGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGa                                                      <  5:157381/149‑1 (MQ=255)                                                                                             ccGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGCAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGACGGCATGCTGCGAGCCCGGGTAGCCAAAGTAGGTCGTGa                                                      >  2:143482/1‑149 (MQ=255)                                                                                                gCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGcc                                                   <  5:40980/149‑1 (MQ=255)                                                                                                 ccgccggcgaaatcaatgccctggcctgcgccaggttccgtcatgatttcggccacagCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCg                                                         >  7:39839‑M2/59‑149 (MQ=255)                                                                                                     ggCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTc                                               <  5:112387/148‑1 (MQ=255)                                                                                                     ggCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTc                                               >  6:112387/1‑148 (MQ=255)                                                                                                             ggcgaaatcaatgccctggcctgcgccaggttccgtcatgatttcgCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGccc                                                  <  5:113999‑M2/98‑1 (MQ=255)                                                                                                             ggcgaaatcaatgccctggcctgcgccaggttccgtcatgatttcgCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGccc                                                  >  6:113999‑M2/47‑144 (MQ=255)                                                                                                              gcgaaatccatgccctggcctgcgccaggttccggcctgctttcgCCGGCGGGAGCGCGGCCCCGCAAGGGCCCGCCGCCGTCCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGt                                                           <  5:235312‑M2/89‑1 (MQ=255)                                                                                                                GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCAtgc                                          <  7:214451‑M1/149‑1 (MQ=255)                                                                                                                                cTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGAAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGtt                          >  6:267224/1‑149 (MQ=255)                                                                                                                                   gcgcAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTc                       >  2:282698/1‑149 (MQ=255)                                                                                                                                     gcAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTccc                     <  6:198386/149‑1 (MQ=255)                                                                                                                                           cAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTg                >  6:238824/1‑148 (MQ=255)                                                                                                                                              ggCATTGTTTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGt            <  1:143482/149‑1 (MQ=255)                                                                                                                                                cATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGAAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTcc          <  5:267224/149‑1 (MQ=255)                                                                                                                                                 aTTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTc           <  3:204292/147‑1 (MQ=255)                                                                                                                                                 aTTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTc           >  4:204292/1‑147 (MQ=255)                                                                                                                                                     atttcgCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTCCGTCAg     >  3:35558‑M2/7‑149 (MQ=255)                                                                                                                                                         cgCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTCCGTCAGCaa  >  1:233754‑M2/3‑148 (MQ=255)                                                                                                                                                           |                                                                                                                                                  GGTTTGGCCCCCAATAGATGCCCGCGGTGCTCTTCGGCCGCCCGGTGCTTGTCGCTACGTTGTTTCTCCAGACCACTGGCTAGCACGAACAGCCGGCTGTGGCC‑‑‑‑‑‑‑GAAATCATGACGGAACCTGGCGCAGGCCAGGGCATTGATTTCGCCGGCGGGAGAGAGGCCCAGCAAGTGCCCGAGGCCGACCAGGTCAAGATGGGCGTCGGCATGCTGCGAGGCCGGGTTGCCAAAGTAGGTCGTGAGCCCGTCCATGCGTGCGGCGCGGATGTTTTCCCAGCTGGAGTCCGTCAGCAA  >  NC_002947/1671318‑1671610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.