New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1782480 =	33 (0.610)	3 (0.060)	3/254	NT	8.0%	coding (1597/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	1782517 =	37 (0.710)					coding (1560/2703 nt)	glnD	uridylyltransferase

CACCTGCGGGTCGGACAAGTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCGTGTATTGCAGC  >  NC_002947/1782379‑1782655                                                                                                                                           |                                                                                                                                           ccagcaagctcatggggcgcctgcccaaacccgagctgatctacctggccgggctgtaccacgacatcggcaagggtcgccagggcgaccactcggaaatcGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGt                                                                                                                                  >  8:104362‑M1/102‑149 (MQ=255)        gggTCGGACAAGTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGcc                                                                                                                           >  6:167524/1‑149 (MQ=255)            atggggcgcctgcccaaacccgagctgatctacctggccgggctgtaccacgacatcggcaagggtcgccagggcgaccactcggaaatcGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGa                                                                                                                                    <  6:86677‑M1/46‑1 (MQ=255)            atggggcgcctgcccaaacccgagctgatctacctggccgggctgtaccacgacatcggcaagggtcgccagggcgaccactcggaaatcGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGa                                                                                                                                    >  5:86677‑M1/91‑136 (MQ=255)              gACAAGTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGAt                                                                                                                                          <  4:152825/128‑1 (MQ=255)              gACAAGTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGAt                                                                                                                                          >  3:152825/1‑128 (MQ=255)                cAAGTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGAc                                                                                                                   >  3:317317/1‑149 (MQ=255)                   gTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGAGAATCATGCGGCTTTACCAGGCCGGCAAAATGTTCCGTTCGCACAACTTCTGCCCCTCCACTGCACCGATTTCCGAGTTGTAGCCCTGGCGACCCt                                                                                                                >  1:259380/1‑149 (MQ=255)                   gTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCt                                                                                                                >  5:259405/1‑149 (MQ=255)                          cgcTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGAt                                                                                                         <  1:229693/149‑1 (MQ=255)                          cgcTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGAt                                                                                                         <  3:154399/149‑1 (MQ=255)                             tGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTc                                                                                                      >  1:326686/1‑149 (MQ=255)                             tGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTc                                                                                                      >  1:331800/1‑149 (MQ=255)                               aGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGt                                                                                                    <  5:9672/149‑1 (MQ=255)                                gCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTg                                                                                                   <  2:259380/149‑1 (MQ=255)                                gCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTg                                                                                                   <  6:259405/149‑1 (MQ=255)                                       tCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGc                                                                                            >  2:320514/1‑149 (MQ=255)                                             tCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGc                                                                                       >  1:254476/1‑148 (MQ=255)                                                    gtggtTCTGCACCAGCCAGACGATCAGGCGTCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAgg                                                                                   >  1:203962/1‑145 (MQ=255)                                                    gtggtTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAgg                                                                                   >  1:272888/1‑145 (MQ=255)                                                               ccagccagACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGt                                                                    >  1:305614/1‑149 (MQ=255)                                                                   ccagACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTgg                                                                >  7:238091/1‑149 (MQ=255)                                                                     agACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTggg                                                               >  5:195257/1‑148 (MQ=255)                                                                     agACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTggg                                                               >  7:181713/1‑148 (MQ=255)                                                                         gATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGgc                                                          <  2:254476/149‑1 (MQ=255)                                                                                  gcTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGgcgc                                                        >  2:65681/1‑142 (MQ=255)                                                                                  gcTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGgcgc                                                        <  1:65681/142‑1 (MQ=255)                                                                                  gcTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGa                                                 <  5:167524/149‑1 (MQ=255)                                                                                          aGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGGCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTg                                         <  6:2396/149‑1 (MQ=255)                                                                                          aGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCCAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCAAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTg                                         >  2:305967/1‑149 (MQ=255)                                                                                           actcggaaatcggtgcagtggacgcgcagaagttctgcgaacggcaccGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTgg                                        >  8:104362‑M2/49‑149 (MQ=255)                                                                                             tcggaaatcggtgcagtggacgcgcagaagttctgcgaacggcaccGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCAt                                                   >  5:86677‑M2/47‑136 (MQ=255)                                                                                             tcggaaatcggtgcagtggacgcgcagaagttctgcgaacggcaccGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCAt                                                   <  6:86677‑M2/90‑1 (MQ=255)                                                                                                 cAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCg                                  <  2:331800/149‑1 (MQ=255)                                                                                                 cAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCg                                  <  2:326686/149‑1 (MQ=255)                                                                                                    cTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCggg                                >  5:295223/1‑148 (MQ=255)                                                                                                       GTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCTGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAAtt                            <  4:112741‑M1/149‑1 (MQ=255)                                                                                                       GTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAAt                             >  8:181713‑M1/1‑148 (MQ=255)                                                                                                         GCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTtc                          <  1:300236‑M1/149‑1 (MQ=255)                                                                                                           cGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTtctc                        <  2:305614/149‑1 (MQ=255)                                                                                                            gTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCg                       >  6:114325/1‑149 (MQ=255)                                                                                                                gCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCgg                                 >  4:278258/1‑135 (MQ=255)                                                                                                                gCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCgg                                 <  3:278258/135‑1 (MQ=255)                                                                                                                   gAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCg                <  5:114325/149‑1 (MQ=255)                                                                                                                       ttCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCgt            >  8:17616/1‑149 (MQ=255)                                                                                                                            cgcgTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCgtgt          <  6:195257/146‑1 (MQ=255)                                                                                                                               gTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCGTGTATTGCa    <  2:279615/149‑1 (MQ=255)                                                                                                                               gTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCGTGTATTGCa    <  8:238091/149‑1 (MQ=255)                                                                                                                                  cACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCGTGTATTGCAGc  <  1:305967/148‑1 (MQ=255)                                                                                                                                           gATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTtctc                        <  5:3953/117‑1 (MQ=255)                                                                                                                                           gATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTtctc                        >  6:3953/1‑117 (MQ=255)                                                                                                                                           |                                                                                                                                           CACCTGCGGGTCGGACAAGTCCTTGCGCTGAGCGGTGGTCGACATCACCAGGTGGTTCTGCACCAGCCAGACGATCAGGCGGCTGTCCCAGGCCGGCAACTGGTGCCGTTCGCAGAACTTCTGCGCGTCCACTGCACCGATTTCCGAGTGGTCGCCCTGGCGACCCTTGCCGATGTCGTGGTACAGCCCGGCCAGGTAGATCAGCTCGGGTTTGGGCAGGCGCCCCATGAGCTTGCTGGCCAGCGGGAATTTCTCGGACACCGGCGTGTATTGCAGC  >  NC_002947/1782379‑1782655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.