New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2785510	46 (0.850)	5 (0.100)	5/246	NT	10.4%	coding (304/390 nt)	PP_5523	hypothetical protein
	?	NC_002947	= 2785556	43 (0.860)					coding (350/390 nt)	PP_5523	hypothetical protein

TGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCTGCC  >  NC_002947/2785415‑2785701                                                                                                                                              |                                                                                                                                                  tgatgaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttgg                                                                                                                                            <  2:258531‑M2/149‑8 (MQ=255)   atgaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttggg                                                                                                                                           >  8:106730‑M2/1‑140 (MQ=255)   atgaGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttgg                                                                                                                                            >  5:67854‑M2/1‑140 (MQ=255)       gTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCg                                                                                                                                      >  3:219877/1‑149 (MQ=255)        tACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCgg                                                                                                                                     >  8:259294/1‑149 (MQ=255)           aGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCggttg                                                                                                                                  >  5:150701/1‑149 (MQ=255)           aGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCggttg                                                                                                                                  >  2:34602/1‑149 (MQ=255)            gTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCggttgg                                                                                                                                 >  4:94873/1‑149 (MQ=255)            gTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCggttgg                                                                                                                                 >  3:261775/1‑149 (MQ=255)                gcgcTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTAc                                                                                                                             >  2:50585/1‑149 (MQ=255)                   cTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtc                                                                                                                          <  7:96287/149‑1 (MQ=255)                    tttGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGAGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtca                                                                                                                         >  2:142027/1‑149 (MQ=255)                       ggTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTtcatc                                                                                                                       <  1:142251/148‑1 (MQ=255)                          cacaTTCCCAAGGTTACATTTGCGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTAGGCTGATCTTGATTGCCACACTTTGGGGAGCGGTTGGTTACTacatcatc                                                                                                                    >  2:235124/1‑148 (MQ=255)                                 ccAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAAt                                                                                                             >  4:117550/1‑148 (MQ=255)                                    aGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGAtt                                                                                                         <  1:34602/149‑1 (MQ=255)                                      gTTACATTTACGCCTCGGTTTGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGc                                                                                                       <  6:329438/149‑1 (MQ=255)                                      gTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGc                                                                                                       <  1:124888/149‑1 (MQ=255)                                       ttACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGc                                                                                                       >  8:301655/1‑148 (MQ=255)                                       ttACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGc                                                                                                       <  7:259294/148‑1 (MQ=255)                                                cGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGAcc                                                                                             <  3:117550/149‑1 (MQ=255)                                                  ccTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCg                                                                                           >  7:144820/1‑149 (MQ=255)                                                    tCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGc                                                                                          >  8:205002/1‑148 (MQ=255)                                                      ggttggttGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGAc                                                                                              >  3:319910/1‑142 (MQ=255)                                                      ggttggttGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGAc                                                                                              <  4:319910/142‑1 (MQ=255)                                                      ggttggttGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCaa                                                                                        <  8:144820/148‑1 (MQ=255)                                                           gttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCa                                                                                                 >  3:22158/1‑134 (MQ=255)                                                           gttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCa                                                                                                 <  4:22158/134‑1 (MQ=255)                                                           gttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTgg                                                                                  <  1:210569/149‑1 (MQ=255)                                                           gttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTgg                                                                                  <  4:261775/149‑1 (MQ=255)                                                            ttgAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTggg                                                                                 >  4:258199/1‑149 (MQ=255)                                                                aCGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTggggc                                                                               >  1:122392/1‑145 (MQ=255)                                                                aCGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCa                                                                              <  3:94873/148‑1 (MQ=255)                                                                       ggAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTcttctt                                                                      >  1:167674/1‑149 (MQ=255)                                                                        gAGCTTGACAATTTCCCAACAAAGATGAGGCGAGATAAGGTAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTATGGGGAGCTGTTGGTTACATCAACATCAAGCAATCATTGCAACTCAGACCCGGAACTGAGTGACATTcatctta                                                                     >  2:184221/1‑148 (MQ=255)                                                                                       cccccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGtttt                                                       <  1:258531/148‑1 (MQ=255)                                                                                       cccccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTc                                                      <  7:301655/149‑1 (MQ=255)                                                                                         cccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcat                                                     <  7:30353‑M2/148‑95 (MQ=255)                                                                                          ccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttac                                                              <  5:242850‑M2/138‑86 (MQ=255)                                                                                          ccAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttac                                                              >  6:242850‑M2/1‑53 (MQ=255)                                                                                           cAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcatcag                                                  <  8:113078‑M2/149‑98 (MQ=255)                                                                                           cAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTAt                                                  <  3:258199/149‑1 (MQ=255)                                                                                             aaGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCg                                                <  7:99527/149‑1 (MQ=255)                                                                                                ttGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTa                                             <  7:205002/149‑1 (MQ=255)                                                                                                          atatGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCttttt                                   <  2:167674/149‑1 (MQ=255)                                                                                                           tttGGGAGGAGCCCTTTGGCTGATCTTGATTGCGTCACTTTGGGGAGCGGTTGGTTACTTCATCATGAAGGAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTc                                  <  1:184221/147‑1 (MQ=255)                                                                                                             tGGGAGCAGCCCTTTGGCTTATCTTGATTGCCTCactttggggggaaattgtcaagctccgcttcgttcaaccaaccgaggcgtaaatgtaaccttgggaatgtgaccaaagcgcttactgtactcatcagtaggcatcgatgccttag                                >  7:113078‑M2/1‑34 (MQ=255)                                                                                                             tGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCt                                 <  6:150701/148‑1 (MQ=255)                                                                                                               ggAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCGGTTGTTTTCTTATCGTTAGCTGCTTTTTGTATc                              >  4:180990/1‑149 (MQ=255)                                                                                                               ggAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTAt                               <  1:142027/148‑1 (MQ=255)                                                                                                               ggAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATc                              <  4:219877/149‑1 (MQ=255)                                                                                                                             gCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCGTTTTCTATCGTCTTGTCGTCttt                >  8:314063/1‑149 (MQ=255)                                                                                                                                         tGCCTCACTTTGGGGAGCGGTTGGTTACTTGATCATCAAGCAATGATTGCAACTCAGACGCGCATCTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTTGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCt     <  1:235124/148‑1 (MQ=255)                                                                                                                                           ccTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCTGcc  >  4:68064/1‑149 (MQ=255)                                                                                                                                             tCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCt                                                     <  4:135442/96‑1 (MQ=255)                                                                                                                                             tCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCt                                                     >  3:135442/1‑96 (MQ=255)                                                                                                                                              |                                                                                                                                                  TGATGAGTACAGTAAGCGCTTTGGTCACATTCCCAAGGTTACATTTACGCCTCGGTTGGTTGAACGAAGCGGAGCTTGACAATTTCCCCCCAAAGTTGAGGCGAGATATGGGAGCAGCCCTTTGGCTGATCTTGATTGCCTCACTTTGGGGAGCGGTTGGTTACTTCATCATCAAGCAATGATTGCAACTCAGACCCGCAACTGTGGGTCATTCTTCTTTTGTCCCGTTGTTTTCTTATCGTTAGCTGCTTTTTCTATCGTCTTGTCGTCTTTATTCAACGTCTGCC  >  NC_002947/2785415‑2785701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.