New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2988836 =	31 (0.580)	6 (0.110)	6/256	NT	14.4%	coding (506/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	2988881 =	41 (0.790)					coding (461/951 nt)	PP_2613	hypothetical protein

TGATTTTGAGCGGGCAGCAATCGGCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTC  >  NC_002947/2988739‑2989024                                                                                                                                               |                                                                                                                                                tGATTTTGAGCGGGCAGCAATCGGCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGAt                                                                                                                                           >  5:265133/1‑149 (MQ=255) gcctggcagcgctggcagaccacttcaccagcctggtgcaggtcgtgctccctgaccacagcgttgccactcaccatgtcacaccggaccatcttgcAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGa                                                                                                                                            >  7:273119‑M1/98‑148 (MQ=255)  gATTTTGAGCGGGCAGCAATCGGCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATg                                                                                                                                          >  5:342972/1‑149 (MQ=255)          gctggcagaccacttcaccagcctggtgcaggtcgtgctccctgaccacagcgttgccactcgccatgccaaccgagacaccgggccaAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGgtg                                                                                                                                  <  6:3176‑M1/61‑1 (MQ=255)             ggCAGCAATCGGCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGa                                                                                                                               <  4:163451/149‑1 (MQ=255)               gcgctggcagaccacttcaccagcctggtgcaggtcgtgctccctgaccacagcgttgccactcaccatgtcacaccgggccaAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACa                                                                                                                             >  1:120653‑M1/84‑149 (MQ=255)                  caATCGGCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATgg                                                                                                                          <  3:220713/149‑1 (MQ=255)                  accacttcaccagcctggtgcaggtcgtgctccctgaccacagcgttgccactcgccatgccaaccgagacaccgggccaAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATgg                                                                                                                          >  5:3176‑M1/81‑149 (MQ=255)                       ggCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGt                                                                                                                     <  6:197718/149‑1 (MQ=255)                            gTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGc                                                                                                                  <  7:55561/147‑1 (MQ=255)                                  gtgtgtTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtgt                                                                                                          >  1:317815/1‑149 (MQ=255)                                   tgtgtTTTCCATTCATGAGCCGGCCCCCTGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtgtg                                                                                                         <  5:249330/149‑1 (MQ=255)                                     tgtTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTgg                                                                                                        <  5:246179/148‑1 (MQ=255)                                            cATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGa                                                                                                 <  3:268613/148‑1 (MQ=255)                                             aTTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAg                                                                                                >  4:303336/1‑148 (MQ=255)                                                         gCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCAc                                                                                    >  4:94349/1‑148 (MQ=255)                                                          cccccAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCAc                                                                                    >  8:297048/1‑147 (MQ=255)                                                                    aCTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTg                                                                          >  4:116293/1‑147 (MQ=255)                                                                    aCTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGaa                                                                        <  7:297048/149‑1 (MQ=255)                                                                        gCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTgg                                                                    >  2:11188/1‑149 (MQ=255)                                                                        gCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTgg                                                                    >  4:328978/1‑149 (MQ=255)                                                                        ccatgtcacaccggaccatcttgcagcctggctgaatgcgctggacgacgaccatcgcaaggcctggcttgGCCCGGTGTCTCGGT‑TGGCATGGCGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGt                                                                   >  5:3176‑M2/72‑149 (MQ=255)                                                                           aTGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCt                                                                 >  2:36872/1‑149 (MQ=255)                                                                             tgtcacaccggaccatcttgcagcctggctgaatgcgctggacgacgaccatcgcaaggcctggct‑‑‑‑‑‑TGGCCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAgcgc                                                         >  1:120653‑M2/67‑149 (MQ=255)                                                                                caccggaccatcttgcagcctggctgaatgcgctggacgacgaccatcgcaaggcctggcttgGCCCGGTGTCTCGGT‑TGGCATGGCGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAgc                                                           <  6:3176‑M2/86‑1 (MQ=255)                                                                                aaCCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtgtg                                                                                                         >  4:99979/1‑104 (MQ=255)                                                                                aaCCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtgtg                                                                                                         <  3:99979/104‑1 (MQ=255)                                                                                  ccGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAgcg                                                          >  6:175268/1‑149 (MQ=255)                                                                                      gaCACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGATGc                                                      >  6:341382/1‑149 (MQ=255)                                                                                         gccGGGCCACGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCt                                                                 <  6:324732/134‑1 (MQ=255)                                                                                         acCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAg                                                   <  1:36872/149‑1 (MQ=255)                                                                                            tcttgcagcctggctgaatgcgctggacgacgaccatcgcaaggcctggctGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGc                                                 >  7:273119‑M2/52‑148 (MQ=255)                                                                                                   ggcAGGCCTTGCGATGGTCGTCGTCCAGATCATTCTGCCAGGCTGTATGATGGTGCGTTGTGAGATGGTGAGTGGCAACGCTGTGGTCTGTGAGCACGAGCTGCCCGAGGCTGGTGAAGTGGTGTGCCATGGCTGGCAGGCCAACCTCg                                         <  6:342972/147‑1 (MQ=255)                                                                                                   gcctggctgaatgcgctggacgacgaccatcgcaaggcctggctGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCg                                         >  7:281555‑M2/45‑149 (MQ=255)                                                                                                   GCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCg                                         >  5:175268‑M1/1‑149 (MQ=255)                                                                                                   GCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCg                                         >  3:303336‑M1/1‑149 (MQ=255)                                                                                                     CAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGc                                       >  6:265133‑M1/1‑149 (MQ=255)                                                                                                      tggctgaatgcgctggacgacgaccatcgcaaggcctggctGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCa                                      <  8:281555‑M2/108‑1 (MQ=255)                                                                                                          cTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATc                                    >  2:108689/1‑147 (MQ=255)                                                                                                               gATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAgcgc                              >  8:42855/1‑148 (MQ=255)                                                                                                               gATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAgcgc                              >  2:303507/1‑148 (MQ=255)                                                                                                                   gtcgtcgtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATg                          <  1:11188/148‑1 (MQ=255)                                                                                                                     cgtcgtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCt                       >  6:216878/1‑149 (MQ=255)                                                                                                                      gtcgtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTc                      >  5:254074/1‑149 (MQ=255)                                                                                                                      gtcgtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTc                      >  1:9703/1‑149 (MQ=255)                                                                                                                         gtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCAc                   <  5:216878/149‑1 (MQ=255)                                                                                                                              gcgcATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATa              <  7:42855/149‑1 (MQ=255)                                                                                                                              gcgcATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATa              <  1:108689/149‑1 (MQ=255)                                                                                                                               cgcATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAg             <  3:116293/149‑1 (MQ=255)                                                                                                                                  aTTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCa          >  2:340620/1‑149 (MQ=255)                                                                                                                                   ttCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATa              <  7:293277/144‑1 (MQ=255)                                                                                                                                   ttCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATa              >  8:293277/1‑144 (MQ=255)                                                                                                                                     cAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCAcc                                                                                   >  7:116090/1‑73 (MQ=255)                                                                                                                                     cAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCAcc                                                                                   <  8:116090/73‑1 (MQ=255)                                                                                                                                      aGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATc        >  5:173914/1‑147 (MQ=255)                                                                                                                                          aGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGTTc  <  3:94349/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                TGATTTTGAGCGGGCAGCAATCGGCTTGTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTC  >  NC_002947/2988739‑2989024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.