New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3184148 =	51 (0.950)	4 (0.080)	4/256	NT	8.4%	coding (636/768 nt)	PP_2794	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3184245 =	38 (0.730)					coding (733/768 nt)	PP_2794	short‑chain dehydrogenase/reductase family oxidoreductase

GAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCAACCCTCGAAC  >  NC_002947/3184100‑3184385                                                                                                                                                   |                                                                                                                                             gAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTgg                                                                                                                                           >  7:202445/1‑149 (MQ=255) gAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTg                                                                                                                                            <  5:201127/148‑1 (MQ=255)  gccacggcgcgttacaggctgctgcacaggtggccgccatcgaccacGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGATGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGt                                                                                                                                          >  3:177119‑M1/48‑149 (MQ=255)     gAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGa                                                                                                                                       >  4:255999/1‑149 (MQ=255)       ggcgcgttacaggctgctgcacaggtggccgccatcgaccacGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAgatcgtggagatcg                                                                                                                                     <  3:236564‑M1/107‑7 (MQ=255)       ggcgcgttacaggctgctgcacaggtggccgccatcgaccacGATCCCCAGCCGCCGCTTCAGCGGGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTg                                                                                                                                            >  4:236564‑M1/43‑142 (MQ=255)          cTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGGGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGGT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATggcg                                                                                                                                  <  1:61262/149‑1 (MQ=255)          cTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATggcg                                                                                                                                  <  1:333304/149‑1 (MQ=255)          cTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATggcg                                                                                                                                  <  4:317131/149‑1 (MQ=255)           ttCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATggcgg                                                                                                                                 >  6:96098/1‑149 (MQ=255)                                        cgatctccacgatctcagcgccgctcatcgcccgcccggcatcgctggcgagcagcagcaaggcgccgtccaggtccgacggcacgctgaagcggcggctggggatcGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGcc                                                                                                     <  3:236564‑M2/42‑1 (MQ=255)                                             accacgatctcagcgccgctcatcgcccgcccggcatcgctggcgagcagcagcaaggcgccatccaggtccgacggcacgctgaagcggcggctggggatcGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGgc                                                                                                >  3:177119‑M2/103‑149 (MQ=255)                                               cacgatctcagcgccgctcatcgcccgcccggcatcgctggcgagcagcagcaaggcgccgtccaggtccgacggcccgctgaagcggcggctggggatcGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGcc                                                                                                     >  4:236564‑M2/101‑142 (MQ=255)                                                     cccAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATaac                                                                                        <  8:202445/148‑1 (MQ=255)                                                      ccAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCTGGCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATaac                                                                                        >  1:250043/1‑148 (MQ=255)                                                      ccAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATaacaa                                                                                      >  1:281633/1‑149 (MQ=255)                                                               gcTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCACCGTGGCGCAATAACAACAAGAACag                                                                             >  2:246675/1‑149 (MQ=255)                                                               gcTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGGCGATTGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACag                                                                             <  5:234994/149‑1 (MQ=255)                                                                   cAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACaggag                                                                          <  4:182433/148‑1 (MQ=255)                                                                      cGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGaggtag                                                                      <  5:291755/149‑1 (MQ=255)                                                                       gTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGaggtagg                                                                     >  7:187291/1‑149 (MQ=255)                                                                        tGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGaggtagg                                                                     >  4:95572/1‑148 (MQ=255)                                                                         gCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAggtaggta                                                                   >  8:108024/1‑149 (MQ=255)                                                                               ggACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATgtgcg                                                             <  5:311340/149‑1 (MQ=255)                                                                                      gACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCaa                                                        <  7:108024/147‑1 (MQ=255)                                                                                       aCGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAAc                                                     <  2:281633/149‑1 (MQ=255)                                                                                           cgcCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGa                                                 <  3:95572/149‑1 (MQ=255)                                                                                           cgcCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGa                                                 <  2:250043/149‑1 (MQ=255)                                                                                            gcCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAg                                                <  8:187291/149‑1 (MQ=255)                                                                                            gcCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAg                                                >  6:153784/1‑149 (MQ=255)                                                                                                   tgct‑gctCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATTACCACAAGAACAGGAGGTAGGTATGTGCGTGCAAAAGCGGAGCAAtgtg                                         >  6:47325/1‑149 (MQ=255)                                                                                                    gct‑gctCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATgtgt                                        >  5:238075/1‑149 (MQ=255)                                                                                                         ctCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAAt                                            >  3:198521/1‑141 (MQ=255)                                                                                                         ctCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAAt                                            <  4:198521/141‑1 (MQ=255)                                                                                                              cAGCGATGCCGGGCGGGCGATGAGCTGCGCTGAGATAGTGGTCGATGGCTGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAAAGTGTCGATGAGGt                               >  5:19030/1‑149 (MQ=255)                                                                                                                  gATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTTTGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGtgcct                           >  7:65004/1‑149 (MQ=255)                                                                                                                          gcgggcgATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCatgat                   >  6:193615/1‑149 (MQ=255)                                                                                                                            gggcgATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATgg                 >  4:286367/1‑149 (MQ=255)                                                                                                                            gggcgATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATgg                 <  5:96098/149‑1 (MQ=255)                                                                                                                            cgctgaagcggcggctggggatcGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATgg                 <  4:177119‑M2/126‑1 (MQ=255)                                                                                                                               cgATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTc              <  6:238075/149‑1 (MQ=255)                                                                                                                                  tGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCaa           <  5:153784/149‑1 (MQ=255)                                                                                                                                  tGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCaa           <  3:255999/149‑1 (MQ=255)                                                                                                                                      cggcgCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCAACCCt       <  8:65004/149‑1 (MQ=255)                                                                                                                                       ggcgCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCACCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCAACCCTc      <  1:246675/149‑1 (MQ=255)                                                                                                                                         cgcTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTACGTGCGTGCAAAACCTGAGCAATGTGTCGAt                                    >  7:149158/1‑117 (MQ=255)                                                                                                                                         cgcTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTACGTGCGTGCAAAACCTGAGCAATGTGTCGAt                                    <  8:149158/117‑1 (MQ=255)                                                                                                                                          ggtGAGATCGTGGGCGTTGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCATTGTGTCGATGAGGTGCCTGCCATGATGGTTCCAACCCTCGaa   <  6:19030/147‑1 (MQ=255)                                                                                                                                           cTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCatga                    >  4:23196/1‑131 (MQ=255)                                                                                                                                           cTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCatga                    <  3:23196/131‑1 (MQ=255)                                                                                                                                           cTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCAACCCTCGAac  <  2:307653/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             GAACGAGGCCTTCCTGGCCAGCGAGGCCGGTGACAAGTTGCGCTCGCGGATCCCCAGCCGCCGCTTCAGCGTGCCGTCGGACCTGGACGGCGCCTTGCTGCT‑GCTCGCCAGCGATGCCGGGCGGGCGATGAGCGGCGCTGAGATCGTGGTCGATGGCGGCCACCTGTGCAGCAGCCTGTAACGCGCCGTGGCGCAATAACAACAAGAACAGGAGGTAGGTATGTGCGTGCAAAACCTGAGCAATGTGTCGATGAGGTGCCTGCCATGATGGTTCCAACCCTCGAAC  >  NC_002947/3184100‑3184385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.