New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3464991	60 (1.110)	3 (0.060)	3/256	NT	5.5%	coding (804/1062 nt)	aroF‑II	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	= 3465038	44 (0.840)					coding (757/1062 nt)	aroF‑II	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase

GCCGGCCAGGCGCTGTTCCAGCACATCATTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAGCGCTGCGCATGGCGTCGCTGG  >  NC_002947/3464892‑3465184                                                                                                                                                    |                                                                                                                                                   gCCGGCCAGGCGCTGTTCCAGCACATCATTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTgg                                                                                                                                                  >  2:7095‑M2/1‑147 (MQ=255) gCCGGCCAGGCGCTGTTCCAGCACATCATTGAAGACCGCTGGCTGGAGCGCCGGGTCCTAGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGTCGGTCCATGGCGATGCTGTTgg                                                                                                                                                  <  8:132785‑M2/149‑3 (MQ=255)             cTGTTCCATCACATCATTTAAGTCCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCg                                                                                                                                      <  4:267659/149‑1 (MQ=255)             cTGTTCCAGCACATCATTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCg                                                                                                                                      <  5:220430/149‑1 (MQ=255)                ttCCAGCACATCATTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCggg                                                                                                                                    <  1:243934/148‑1 (MQ=255)                ttCCAGCACATCATTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCgg                                                                                                                                     <  1:237888/147‑1 (MQ=255)                         atcatTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGgc                                                                                                                          >  4:327032/1‑149 (MQ=255)                            atTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGgccgc                                                                                                                       >  3:152730/1‑149 (MQ=255)                            atTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGgccg                                                                                                                        <  4:94554/148‑1 (MQ=255)                                aaGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTAGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCcgcg                                                                                                                   >  1:83647/1‑149 (MQ=255)                                  gACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGGCCCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGtt                                                                                                                                                    <  1:60502/115‑1 (MQ=255)                                  gACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGtt                                                                                                                                                    >  2:60502/1‑114 (MQ=255)                                     cGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTa                                                                                                              <  3:264840/149‑1 (MQ=255)                                      gctggctgGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTAc                                                                                                             <  1:235227/149‑1 (MQ=255)                                          gctggcGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCTCGCAGACCGG‑CCTTTTTCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAg                                                                                                          <  1:276534/148‑1 (MQ=255)                                          gctggcGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCGTTTGTGGCCGCCGCGCAGTACAAgg                                                                                                         <  5:46530/149‑1 (MQ=255)                                          gctggcGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAg                                                                                                          <  5:4293/148‑1 (MQ=255)                                          gctggcGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAg                                                                                                          <  3:297428/148‑1 (MQ=255)                                          gctggcGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAg                                                                                                          <  6:16940/148‑1 (MQ=255)                                            tggcGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgtg                                                                                                       >  5:305299/1‑149 (MQ=255)                                              gcgcgcCGGGTCCTTTCCGCTGTTGTCGTGGCTGCAATCGACCATGATCAGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgtg                                                                                                       <  6:282994/147‑1 (MQ=255)                                              gcgcgcCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgtgt                                                                                                      <  5:65695/148‑1 (MQ=255)                                              gcgcgcCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgtgt                                                                                                      <  3:35834/148‑1 (MQ=255)                                               cgcgcCGGGTCCTTGCCGCTGTTGGCGTTGATGCAATCGACCATGATCCGTGCCTGCAGACCTG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgtgtgt                                                                                                    <  2:265424/149‑1 (MQ=255)                                                          cTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGc                                                                                         >  4:327834/1‑149 (MQ=255)                                                           ttGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgt                                                                                                        <  5:2010/133‑1 (MQ=255)                                                           ttGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGgt                                                                                                        >  6:2010/1‑133 (MQ=255)                                                              ccGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCaa                                                                                     <  4:152730/149‑1 (MQ=255)                                                                 cTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGc                                                                                         <  8:24931/142‑1 (MQ=255)                                                                 cTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGc                                                                                         >  7:24931/1‑142 (MQ=255)                                                                      ggCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCg                                                                              <  7:259637/148‑1 (MQ=255)                                                                       gCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCga                                                                             <  6:305299/148‑1 (MQ=255)                                                                                         aTGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCt                                                           >  7:24088/1‑148 (MQ=255)                                                                                          tGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGa                                                         <  8:24088/149‑1 (MQ=255)                                                                                             tCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCa                                                      >  5:174206/1‑149 (MQ=255)                                                                                                gTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTggcacggatcatggtcgattgcagccacgccaacagcggcaaggacccggcgcgccagccagcggtcttcaatgatgtgctggaacagcgcctggcc                                                   <  3:203226‑M2/149‑98 (MQ=255)                                                                                                  gCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTggcacggatcatggtcgattgcagccacgccaacagcggcaaggacccggcgcgccagcca                                                                                       <  5:195537‑M2/111‑62 (MQ=255)                                                                                                  gCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTggcacggatcatggtcgattgcagccacgccaacagcggcaaggacccggcgcgccagcca                                                                                       >  6:195537‑M2/1‑50 (MQ=255)                                                                                                     tGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATAcc                                              >  1:179394/1‑149 (MQ=255)                                                                                                        aGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGaa                                           >  1:148363/1‑149 (MQ=255)                                                                                                          aCCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGt                                         <  5:48504/149‑1 (MQ=255)                                                                                                          aCCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGt                                         <  3:327834/149‑1 (MQ=255)                                                                                                           ccGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTg                                        <  3:327032/149‑1 (MQ=255)                                                                                                            cGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTgg                                       >  1:310068/1‑149 (MQ=255)                                                                                                                  ttGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCCCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTg                                  >  8:178955/1‑149 (MQ=255)                                                                                                                        aaCGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTg                            <  6:164579/149‑1 (MQ=255)                                                                                                                              tGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAgc                      >  3:36534/1‑149 (MQ=255)                                                                                                                                gCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAgcg                     <  2:179394/148‑1 (MQ=255)                                                                                                                                       aTGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTg                            <  8:211396/134‑1 (MQ=255)                                                                                                                                       aTGGCGATGCTGTTGGCATCATCGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTg                            >  7:211396/1‑134 (MQ=255)                                                                                                                                          gCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAGCGCTGCGCATgg           <  4:36534/148‑1 (MQ=255)                                                                                                                                                cTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAGCGCTGCGCATGGCGTCGCt    <  2:83647/149‑1 (MQ=255)                                                                                                                                                 tGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAGCGCTGCGCATGGCGTCGCtg   >  8:201686/1‑149 (MQ=255)                                                                                                                                                   ttggcacggatcatggtcgattgcagccacgccaacagcggcaaggacccggcgcgccagccagcggtcttcaatgatgtgctggaacagcgcctggccggcgaccgttcgttggtcggcgtcatgatcgaagggcacttgttcgat   >  4:203226‑M2/1‑2 (MQ=255)                                                                                                                                                   ttGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAGCGCTGCGCATGGCGTCGCtgg  <  6:174206/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCGGCCAGGCGCTGTTCCAGCACATCATTGAAGACCGCTGGCTGGCGCGCCGGGTCCTTGCCGCTGTTGGCGTGGCTGCAATCGACCATGATCCGTGCCTGCAGACCGG‑CCTTGGCCAACGCCTGGCGGGCCATGGCGATGCTGTTGGCATCATGGTTCGGGCCTTTGTGGCCGCCGCGCAGTACAAGGTGTGTGTCCGGGTTGCCCAAGGTCTCGATGATCGCCGGGTGGCCCTGAGCATCCATACCGAAGTGGCGGTGCGGGTGGGCAGCGCTGCGCATGGCGTCGCTGG  >  NC_002947/3464892‑3465184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.