New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3586021 =	43 (0.800)	3 (0.060)	3/252	NT	7.1%	coding (215/1329 nt)	benK	benzoate MFS transporter
	?	NC_002947	3586062 =	38 (0.740)					coding (256/1329 nt)	benK	benzoate MFS transporter

CCTGTTCATCTACGGTGTGGTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATG  >  NC_002947/3585914‑3586208                                                                                                                                                     |                                                                                                                                                    aggccggcgatgaagcggtagatgccaaactcgctcgggttgctggcaaagccattgaggatggtcgcccccgagaacaaggcgaaacagatggcaatgcccttcttGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCa                                                                                                                                                     >  7:236379‑M1/108‑149 (MQ=255)     cggcgatgaagcggtagatgccaaactcgctcgggttgctggcaaagccattgaggatggtcgcccccgagaacaaggcgaaacagatggcaatgcccttcttGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCaagaa                                                                                                                                                 >  3:186732‑M1/104‑149 (MQ=255)       cATCTACGGTGTGGTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCaagaag                                                                                                                                                <  4:115722/148‑1 (MQ=255)        aTCTACGGTGTGGTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAggg                                                                                                                                              >  8:152318/1‑149 (MQ=255)          cTACGGTGTGGTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGc                                                                                                                                             <  6:172559/148‑1 (MQ=255)               gtgtGGTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGc                                                                                                                                        >  1:84188/1‑148 (MQ=255)                    gTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTg                                                                                                                                  >  7:302514/1‑149 (MQ=255)                          ccGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGc                                                                                                                            >  3:12144/1‑149 (MQ=255)                            ggTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCt                                                                                                                          >  7:110675/1‑149 (MQ=255)                                 tcatGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCACGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTtc                                                                                                                     >  6:227531/1‑149 (MQ=255)                                           gTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑ggg                                                                                                               >  6:31244/1‑144 (MQ=255)                                           gTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑ggg                                                                                                               <  5:31244/144‑1 (MQ=255)                                           gTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGa                                                                                                          >  8:119185/1‑149 (MQ=255)                                                  cTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCt                                                                                                   >  4:101013/1‑149 (MQ=255)                                                     aCCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCaa                                                                                                <  4:12144/149‑1 (MQ=255)                                                      ccccGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAAt                                                                                               <  7:93041/149‑1 (MQ=255)                                                        ccGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATgg                                                                                             >  6:313194/1‑149 (MQ=255)                                                           ttGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCtt                                                                                          >  4:276145/1‑149 (MQ=255)                                                             gCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCttt                                                                                         <  2:84188/148‑1 (MQ=255)                                                              cAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGc                                                                                       <  3:276145/149‑1 (MQ=255)                                                               aGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGcc                                                                                      <  8:110675/149‑1 (MQ=255)                                                                ggCTGGGGCACTGGGCAGCTATGCGCTGTCCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCa                                                                                     <  3:74058/149‑1 (MQ=255)                                                                   tGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATg                                                                                              >  4:67195/1‑137 (MQ=255)                                                                   tGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATg                                                                                              <  3:67195/137‑1 (MQ=255)                                                                   tGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGc                                                                                   >  7:137606/1‑148 (MQ=255)                                                                       gCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAAccc                                                                              >  6:136883/1‑149 (MQ=255)                                                                               cAGCTATGCGCTTTTCGGCATTATGTTCGGCGCACTGGCCTTCTGCAGCCTGGCCGACCGCATCGGTCGCAAGTAGGTCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGt                                                                      <  5:141337/149‑1 (MQ=255)                                                                                  cTATGCGCTGTTCGGCATGATGTTCGGGGCCCTGGCCTTCGGCAGGCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGGCTTGTTCTC‑ggg                                                                                                               <  8:160205/105‑1 (MQ=255)                                                                                  cTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTg                                                                   >  2:286070/1‑149 (MQ=255)                                                                                  cTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTg                                                                   <  7:119185/149‑1 (MQ=255)                                                                                  cTATGCGCTGTTCGGCATGATGTTCGGAGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑ggg                                                                                                               >  7:160205/1‑105 (MQ=255)                                                                                     tGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCTCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTgg                                                                  <  8:137606/147‑1 (MQ=255)                                                                                                gCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCtt                                                      >  5:192390/1‑148 (MQ=255)                                                                                                 cATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCa                                                                                     >  4:249637/1‑116 (MQ=255)                                                                                                 cATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCa                                                                                     <  3:249637/116‑1 (MQ=255)                                                                                                  atgatgTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCAt                                                   >  8:144313/1‑149 (MQ=255)                                                                                                       ttcttgcgcccgatgcggtcggccaggctgccgaaggccagggcgcAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCg                                              >  3:186732‑M2/47‑149 (MQ=255)                                                                                                           tgcgcccgatgcggtcggccaggctgccgaaggccagggcgcAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCt                                          >  7:236379‑M2/43‑149 (MQ=255)                                                                                                            gcgcccgatgcggtcggccaggctgccgaaggccagggcgcAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTg                                         >  6:256877‑M2/42‑149 (MQ=255)                                                                                                              GCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTggg                                       >  5:227531‑M1/1‑149 (MQ=255)                                                                                                                 CTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTg                                    >  8:302514‑M1/1‑149 (MQ=255)                                                                                                                      cTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTggcg                               <  1:286070/149‑1 (MQ=255)                                                                                                                       ttCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTggcgg                              >  5:176812/1‑149 (MQ=255)                                                                                                                               ccTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGc                      <  5:136883/149‑1 (MQ=255)                                                                                                                                   gCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCaa                  >  6:167596/1‑149 (MQ=255)                                                                                                                                          gCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTg           >  7:188891/1‑149 (MQ=255)                                                                                                                                          gCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GCGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTg           >  1:178652/1‑149 (MQ=255)                                                                                                                                            aTCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTgg          >  8:209891/1‑148 (MQ=255)                                                                                                                                                 gcgcAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACtga    >  7:95905‑M2/5‑149 (MQ=255)                                                                                                                                                  cgcAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACtgat   <  7:209891‑M2/146‑1 (MQ=255)                                                                                                                                                    cAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTCGGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACtgatg  <  8:14067‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCTGTTCATCTACGGTGTGGTACTGCCGGTCATCATGAAAGAGTGGGGCCTGACCCCGTTGCAGGCTGGTGCACTGGGCAGCTATGCGCTGTTCGGCATGATGTTCGGCGCCCTGGCCTTCGGCAGCCTGGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTC‑GGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATG  >  NC_002947/3585914‑3586208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.