New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3930902	43 (0.800)	5 (0.100)	5/250	NT	11.1%	coding (206/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	= 3930930	39 (0.770)					coding (178/1293 nt)	PP_5603	FAD dependent oxidoreductase

CCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTGGCGGCACCCGCAGGGCCGG  >  NC_002947/3930786‑3931076                                                                                                                                                 |                                                                                                                                                   ccACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccg                                                                                                                                                <  1:322633‑M2/149‑5 (MQ=255) ccACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccg                                                                                                                                                <  4:256972‑M2/149‑5 (MQ=255)  cacaCTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccgc                                                                                                                                               <  4:173816‑M2/149‑6 (MQ=255)       tCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccgccagaa                                                                                                                                          <  5:274096‑M2/149‑11 (MQ=255)         aCGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGc                                                                                                                                         <  3:173816/148‑1 (MQ=255)          cGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCt                                                                                                                                       <  6:337926/149‑1 (MQ=255)             cTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCa                                                                                                                                    >  7:35311/1‑149 (MQ=255)                  cgcTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACg                                                                                                                               >  5:10372/1‑149 (MQ=255)                   gcTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGc                                                                                                                              <  6:10372/149‑1 (MQ=255)                     tGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCTGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCaa                                                                                                                            <  3:279503/149‑1 (MQ=255)                         ggTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGccc                                                                                                                        >  5:290596/1‑149 (MQ=255)                                            gTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGaaa                                                                                                     >  3:100579/1‑149 (MQ=255)                                             tCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAAc                                                                                                    >  8:114942/1‑149 (MQ=255)                                             tCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGACCTCCAGCACCCGCTGCGAAAc                                                                                                    <  8:35311/149‑1 (MQ=255)                                               aaaaAGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGCCACTTCCAGCGTACCTGGCGGGTGGCCGGCATCGCCGCCTGGCTCAAGGCCCCGCCAAGGCCAGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGc                                                                                                  >  1:167130/1‑149 (MQ=255)                                                aaaCGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTc                                                                                                                      >  7:100084/1‑128 (MQ=255)                                                aaaCGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTc                                                                                                                      <  8:100084/128‑1 (MQ=255)                                                 aaCGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCt                                                                                                <  6:290596/149‑1 (MQ=255)                                                  aCGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCtt                                                                                               <  7:270470/149‑1 (MQ=255)                                                   cGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTc                                                                                              <  2:322633/149‑1 (MQ=255)                                                   agTTGCCGGTCGAGCAAAAACTCCTGGTTGATCTGCTGATGGTGGGCGTTACAGAGTTCCTGGTGGGTGGCCGTCATGGCTGCCTGGCTCAAGTCCCCGCTAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGATGGTAAACGCCTTc                                                                                              <  8:262627/148‑1 (MQ=255)                                                        ccGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCAGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTg                                                                                         >  2:147480/1‑149 (MQ=255)                                                                   aaaaCTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACgg                                                                              <  4:100579/149‑1 (MQ=255)                                                                      aCTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGgcgc                                                                           >  2:258789/1‑149 (MQ=255)                                                                             gTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTcc                                                                     >  3:18471/1‑148 (MQ=255)                                                                                  tCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCACGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGacac                                                                >  5:251936/1‑148 (MQ=255)                                                                                   cTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCt                                                                                                                                       <  4:64744/76‑1 (MQ=255)                                                                                   cTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCt                                                                                                                                       >  3:64744/1‑76 (MQ=255)                                                                                         aTGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCa                                                        >  2:49000/1‑149 (MQ=255)                                                                                          tGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCAc                                                       >  6:239409/1‑149 (MQ=255)                                                                                               gCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAg                                                   >  2:176182/1‑148 (MQ=255)                                                                                                      cAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCa                                            <  1:28891/148‑1 (MQ=255)                                                                                                       aGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAgc                                          >  3:50353/1‑149 (MQ=255)                                                                                                           tACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccgccaggtacgctggaacggccagcatctgcagatgaaccaggagtttttgctcgcccggcaacgttttgaccaagcgctgcgcgaagaccttcagcgcgcaggcgtg                                      <  3:239293‑M2/149‑111 (MQ=255)                                                                                                           tACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAgcagcc                                      >  1:19820/1‑149 (MQ=255)                                                                                                            aCCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccgccaggtacgctggaacggccagcatctgcagatgaaccaggagtttttgctcgaccggcaacgttttgaccaagcgctgcgcgaag                                                          >  3:98840‑M2/1‑38 (MQ=255)                                                                                                            aCCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccgccaggtacgctggaacggccagcatctgcagatgaaccaggagtttttgctcgaccggcaacgttttgaccaagcgctgcgcgaag                                                          <  4:98840‑M2/128‑91 (MQ=255)                                                                                                               tGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCcccgccaggtacgctggaacggccagcatctgcagatgaaccaggagtttttgctcgaccggcaacggtttgaccaagcgctgcgcgaagaccttcagcgcgcaggcgtgagtg                                  <  8:176663‑M2/149‑115 (MQ=255)                                                                                                                      tGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATg                           <  1:176182/149‑1 (MQ=255)                                                                                                                      tGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATg                           >  8:190494/1‑149 (MQ=255)                                                                                                                      tGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATg                           >  1:204098/1‑149 (MQ=255)                                                                                                                        gCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGc                         <  4:50353/149‑1 (MQ=255)                                                                                                                         ccGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGcc                        >  2:157035/1‑149 (MQ=255)                                                                                                                                ggCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACg                                                      >  2:251409/1‑112 (MQ=255)                                                                                                                                ggCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACg                                                      <  1:251409/112‑1 (MQ=255)                                                                                                                                  ccgccTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCTCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTggcggc                <  5:239409/148‑1 (MQ=255)                                                                                                                                      cTGGCTCAAGGCcccgccaggtacgctggaacggccagcatctgcagatgaaccaggagtttttgctcgaccggcaacgttttgaccaagcgctgcgcgaagaccttcagcgcgcaggcgtgagtgtggtcgaggggcgggtgcgtgag           >  4:239293‑M2/1‑12 (MQ=255)                                                                                                                                         gCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTGGCGGCACCCGCAg        <  7:114942/149‑1 (MQ=255)                                                                                                                                          cTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTGGCGGCACCCGCAgg       <  4:18471/149‑1 (MQ=255)                                                                                                                                             aaGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTGGCGGCACCCGCAggg      <  8:126754/147‑1 (MQ=255)                                                                                                                                               ggCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTGGCGGCACCCGCAGGGCCgg  >  3:256248/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCGAGCAAAAACTCCTGGTTCATCTGCAGATGCTGGCCGTTCCAGCGTACCTGGCGGGTGGCCGGCATGGCCGCCTGGCTCAAGGCCCCGCCAAGGCCTGCATGACGCAAGCCCTCCAGCACCCGCTGCGAAACGCCTTCAACTGCCGCGAAACGGCGCCACTCCGACACCACTGTCACGGAGTAACCCAGCCGCCGCAAGCCAATGGCCGTGGCGGCACCCGCAGGGCCGG  >  NC_002947/3930786‑3931076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.