New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4992272	54 (1.000)	3 (0.060)	3/252	NT	5.9%	coding (229/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	= 4992305	44 (0.860)					coding (262/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha

CGCGATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTCCCGACCTACCGCCAGCAAA  >  NC_002947/4992157‑4992452                                                                                                                                                     |                                                                                                                                                    cgcgATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGAcgc                                                                                                                                                     >  5:121680/1‑149 (MQ=255) cgcgATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGAcgc                                                                                                                                                     >  4:154611/1‑149 (MQ=255)     atcgatGTCGATGCTGCCGACACTGCCGACCTTCACTACAGCCTGGTCCGCTTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCAGCAGATCCTCCGTCAAGGCATGCGCCCCATGCTCAAGACGCgga                                                                                                                                                  <  4:320013‑M2/148‑4 (MQ=255)     atcgatGTCGATGCTGCCGACACTGCCGACCTGCCCTACAGCCTGGTACGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGAAATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACTCTGAt                                                                                                                                                 >  4:325169/1‑149 (MQ=255)         atgtcgatgCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTc                                                                                                                                             >  4:103958/1‑149 (MQ=255)         atgtcgatgCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTc                                                                                                                                             <  2:316562/149‑1 (MQ=255)           gtcgatgCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGa                                                                                                                                           >  1:186811/1‑149 (MQ=255)            tcgatgCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGa                                                                                                                                           >  2:328689/1‑148 (MQ=255)                tgctgcCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGcc                                                                                                                                      <  3:103958/149‑1 (MQ=255)                      cGACACAGCCGACCTGTCCTACAGCATCGTCCGCGTGCTCTTCGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCAtgg                                                                                                                                <  8:300183/149‑1 (MQ=255)                        acacTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCAtggtg                                                                                                                              >  7:298010/1‑149 (MQ=255)                              ccGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTg                                                                                                                          <  5:51834/147‑1 (MQ=255)                                  ccTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAgc                                                                                                                    >  7:47698/1‑149 (MQ=255)                                         tACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGcc                                                                                                                                      >  7:18041/1‑124 (MQ=255)                                         tACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGcc                                                                                                                                      <  8:18041/124‑1 (MQ=255)                                           cAGCCTGGTCCGCGTGCTCGACGAGAAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCagaa                                                                                                             <  7:157000/147‑1 (MQ=255)                                               cTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGAt                                                                                                       <  1:328689/149‑1 (MQ=255)                                                  gTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGAACCTCCGTCAAGGCATGCGCGCCATGCTCACGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTc                                                                                                    >  1:102878/1‑149 (MQ=255)                                                    ccGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCt                                                                                                  >  2:265646/1‑149 (MQ=255)                                                            tCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTcc                                                                                                   <  2:16225/140‑1 (MQ=255)                                                            tCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTcc                                                                                                   >  1:16225/1‑140 (MQ=255)                                                              gacgaGCAAGGCGATGTGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTcc                                                                                                   >  4:204024/1‑138 (MQ=255)                                                              gacgaGCAAGGCGATGTGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTcc                                                                                                   <  3:204024/138‑1 (MQ=255)                                                              gacgaGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATg                                                                                          <  1:265646/147‑1 (MQ=255)                                                                    cAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGCCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCTGCGCCAGAAGAAGATGTCCTTCTCCATGCAAAGCCt                                                                                  >  6:233576/1‑149 (MQ=255)                                                                    cAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCACCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCt                                                                                  >  1:254289/1‑149 (MQ=255)                                                                      aGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTgg                                                                                <  6:58879/149‑1 (MQ=255)                                                                       ggCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTggg                                                                               >  7:81655/1‑149 (MQ=255)                                                                       ggCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTggg                                                                               <  8:47698/149‑1 (MQ=255)                                                                       ggCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTggg                                                                               <  5:174588/149‑1 (MQ=255)                                                                           aTGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCgaa                                                                           <  2:249659/149‑1 (MQ=255)                                                                           aTGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCgaa                                                                           <  6:271694/149‑1 (MQ=255)                                                                               gcAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGaagaag                                                                       >  5:202121/1‑149 (MQ=255)                                                                                             ccGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCaaa                                                                                      <  3:176970/120‑1 (MQ=255)                                                                                             ccGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCaaa                                                                                      >  4:176970/1‑120 (MQ=255)                                                                                             ccGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGc                                                         >  5:91816/1‑149 (MQ=255)                                                                                               gAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGGAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGc                                                         >  3:304375/1‑147 (MQ=255)                                                                                                aaGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAg                                                      >  8:85895/1‑149 (MQ=255)                                                                                                          cccGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAggcgctggcgc                                            <  8:81655/149‑1 (MQ=255)                                                                                                           ccGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCggatctgcgggtcgatgtcttcggcccaggggccttgcgcatcgccttgctcgtcgagcacgcggaccaggctgtaggacaggtcggcagtgtcggcagcatcga                                            <  5:10145‑M2/148‑106 (MQ=255)                                                                                                           ccGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGATTCCAggagcaggagct                                           >  6:236404/1‑149 (MQ=255)                                                                                                            cGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCggatctgcgggtcgatgtcttcaacccaggggccttgcgcatcgccttgctcgtcgagcacgcggaccaggctggaggacaggtcggcagtgtcggcagcataga                                            <  1:271146‑M2/147‑106 (MQ=255)                                                                                                            cGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGgcgctggcgctg                                          <  2:254289/149‑1 (MQ=255)                                                                                                              cAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGaa                                        <  3:154611/149‑1 (MQ=255)                                                                                                                   cctccGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCa                                   >  8:255199/1‑149 (MQ=255)                                                                                                                    ctccGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCa                                   <  8:211461/148‑1 (MQ=255)                                                                                                                       cGTCAAGGCATGCGCGCCATGCTCAAGACGCggatctgcgggtcgatgtcttcggcccaggggccttgcgcatcgccttgctcgtcgagcacgcggaccaggctgtaggacaggtcggcagtgtcggcagcatcgacatcgatcgcgg                                >  6:10145‑M2/1‑31 (MQ=255)                                                                                                                            aGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGGAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACAtgt                          <  4:304375/149‑1 (MQ=255)                                                                                                                             ggCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACAtgtg                         >  4:110878/1‑149 (MQ=255)                                                                                                                              gaaTGCGCTCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTTGTTGCCCAGCGCCATAAGAAGATGTCCTTCTACATGCACAGCCTGGGCTAAGAAGCCATCGTCAGCGGCCAGGCGCTGTCGCTGAACCGCACCGACATGTGc                        <  3:320013/147‑1 (MQ=255)                                                                                                                              gCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCATTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCTGTCGCTGGCTCTGAACCGCACCGACATGTGc                        <  3:325169/149‑1 (MQ=255)                                                                                                                                 tGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAATCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTc                     <  5:236404/149‑1 (MQ=255)                                                                                                                                     cgcCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTCCCGa                 <  2:102878/149‑1 (MQ=255)                                                                                                                                             tCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTCCCGACCTACCGc         >  2:233975/1‑149 (MQ=255)                                                                                                                                             tCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTCCCGACCTACCGc         >  2:179646/1‑149 (MQ=255)                                                                                                                                                    gcgGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTCCCGACCTACCGCCAGCaaa  <  6:121680/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGCGATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCTCCGTCAAGGCATGCGCGCCATGCTCAAGACGCGGATCTTCGACAGCCGCATGGTGGTTGCCCAGCGCCAGAAGAAGATGTCCTTCTACATGCAAAGCCTGGGCGAAGAAGCCATCGGCAGCGGCCAGGCGCTGGCGCTGAACCGCACCGACATGTGCTTCCCGACCTACCGCCAGCAAA  >  NC_002947/4992157‑4992452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.