New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5371490	55 (1.020)	3 (0.060)	3/256	NT	5.6%	coding (447/3231 nt)	carB	carbamoyl‑phosphate synthase large subunit
	?	NC_002947	= 5371541	47 (0.900)					coding (396/3231 nt)	carB	carbamoyl‑phosphate synthase large subunit

GTGCCGCCCATGGTGAACGACGGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGCGTCCGGGCGCTCTT  >  NC_002947/5371398‑5371689                                                                                                                                                |                                                                                                                                                     gTGCCGCCCATGGTGACCGACGGGCGAATGTTGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCTGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTc                                                                                                                                                 <  5:237193/149‑1 (MQ=255) gTGCCGCCCATGGTGAACGACGGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTc                                                                                                                                                 >  8:247993/1‑149 (MQ=255)    ccgccCATGGTGAACGACGGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTc                                                                                                                                              <  6:221481/149‑1 (MQ=255)        ccATGGTGAACGACGGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGcc                                                                                                                                          <  2:313264/149‑1 (MQ=255)                aaCGACGGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGAt                                                                                                                                  >  5:215170/1‑149 (MQ=255)                 acgacgGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATg                                                                                                                                 <  3:64530/149‑1 (MQ=255)                    acgtgagAATGATGCACGTGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTATTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGgtg                                                                                                                              <  4:27559/143‑1 (MQ=255)                                  cACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCAc                                                                                                                 <  1:199973/148‑1 (MQ=255)                                   aCGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCAcc                                                                                                                >  6:259168/1‑148 (MQ=255)                                    cGGGAAGCCGAGCTTCTCGAGGACCGCATTGACCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGCCAACGCTGACAccat                                                                                                              <  8:18648/149‑3 (MQ=255)                                     gggAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGat                                                                                                             >  4:297838/1‑149 (MQ=255)                                        aaGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGatcat                                                                                                          <  2:15730/149‑1 (MQ=255)                                           ccGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCAtctc                                                                                                       <  8:36149/149‑1 (MQ=255)                                            cGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCAtctc                                                                                                       <  7:191271/148‑1 (MQ=255)                                            cGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCAtctc                                                                                                       >  8:5698/1‑148 (MQ=255)                                             gAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGACTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCa                                                                                                     >  3:233015/1‑149 (MQ=255)                                                 ttCTCGAGGACCGCATTCGACTATTCCATGCTCTGGGCGATACCGGAGCGCGGGCACTCCACGCCGATGTCCTTCATGGACTTGTCGAAGCGCGAACGGTCTTCGGCCTAGTCCATGGTCTCAGCGTTGGCACCGATCATCTCCAcccc                                                                                                 >  2:283241/1‑149 (MQ=255)                                                         gACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTtct                                                                                         >  4:277905/1‑149 (MQ=255)                                                         gACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTtct                                                                                         >  8:5977/1‑149 (MQ=255)                                                                   gCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGcc                                                                               >  7:101603/1‑149 (MQ=255)                                                                   gCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGcc                                                                               >  6:232757/1‑149 (MQ=255)                                                                     ctctTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTtc                                                                                          >  1:6827/1‑136 (MQ=255)                                                                     ctctTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTtc                                                                                          <  2:6827/136‑1 (MQ=255)                                                                     ctctTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGt                                                                             >  1:331872/1‑149 (MQ=255)                                                                        ttCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGaa                                                                                              <  5:78001/129‑1 (MQ=255)                                                                        ttCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGaa                                                                                              >  6:78001/1‑129 (MQ=255)                                                                        ttCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTg                                                                            <  5:232757/147‑1 (MQ=255)                                                                          ccATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTgg                                                                           <  7:247993/146‑1 (MQ=255)                                                                          ccATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTgg                                                                           <  8:200293/146‑1 (MQ=255)                                                                             tGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCtcc                                                                     <  8:101603/149‑1 (MQ=255)                                                                                tgtgGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCtccagg                                                                  >  5:110359/1‑149 (MQ=255)                                                                                     gCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAAcggtatcgcccacagcatggaagaggccaatgcggtcctcgagaagctcggcttcccgtgcatcattcgcccgtcgttcaccatgggcg                                                             <  5:41295‑M2/149‑90 (MQ=255)                                                                                       gATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAAcggtatcgcccacagcatggaagaggccaatgcggtcctcgagaagctcggcttcccgtgcatcattcgcccgtcgttcaccatgggcggc                                                           <  1:192920‑M2/149‑92 (MQ=255)                                                                                            cGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCAc                                                                                                    >  8:270764/1‑103 (MQ=255)                                                                                            cGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCAc                                                                                                    <  7:270764/103‑1 (MQ=255)                                                                                            cGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAg                                                      >  3:312871/1‑149 (MQ=255)                                                                                                   cgGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAggg                                               <  2:331872/149‑1 (MQ=255)                                                                                                          tCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTg                                        >  4:204476/1‑149 (MQ=255)                                                                                                           ccAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAggg                                                           <  2:139063/129‑1 (MQ=255)                                                                                                            cAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAAcggtatcgcccacagcatggaagaggccaatgcggtcctcgagaagctcggcttcccgtgcatcattcgcccgtcgttcaccatgggcggcaccggcggcggtatcgcttac                                      >  2:192920‑M2/1‑37 (MQ=255)                                                                                                               gCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCAc                                   >  4:281710/1‑149 (MQ=255)                                                                                                                 cGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGACGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCAcc                                  >  1:72877/1‑148 (MQ=255)                                                                                                                       ccTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGat                                                                                                             >  5:211134/1‑67 (MQ=255)                                                                                                                       ccTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGat                                                                                                             <  6:211134/67‑1 (MQ=255)                                                                                                                        cTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTc                           <  5:259168/148‑1 (MQ=255)                                                                                                                         ttCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCgg                         >  5:308995/1‑149 (MQ=255)                                                                                                                               gCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGa                    <  7:5977/148‑1 (MQ=255)                                                                                                                                ccTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGACAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACg                  <  1:113954/149‑1 (MQ=255)                                                                                                                                  ttGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGc                >  4:79730/1‑149 (MQ=255)                                                                                                                                    gTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGc                <  3:204476/147‑1 (MQ=255)                                                                                                                                        aaGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGCGTCCgg          <  3:63950/149‑1 (MQ=255)                                                                                                                                        aaGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGCGTCCgg          >  4:162264/1‑149 (MQ=255)                                                                                                                                        aaGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGCGTCCgg          <  4:258219/149‑1 (MQ=255)                                                                                                                                                aCGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGCGTCCGGGCGCTCtt  >  4:253028/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GTGCCGCCCATGGTGAACGACGGGCGAATGATGCACGGGAAGCCGAGCTTCTCGAGGACCGCATTGGCCTCTTCCATGCTGTGGGCGATACCGGAGCGCGGGCACTCCAGGCCGATGTCCTTCATGGCCTTGTCGAAGCGCGAACGGTCTTCGGCCTTGTCGATGGTGTCAGCGTTGGCACCGATCATCTCCACGCCGAACTTCTCCAGAACGCCGTGGCGCTCCAGGTCCAGGGCGCAGTTCAGGGCGGTCTGGCCACCCATGGTCGGCAGGACGGCGTCCGGGCGCTCTT  >  NC_002947/5371398‑5371689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.