mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 56.7% | ‑4.7 / 23.4 | 30 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,327,121 | 0 | C | T | 47.0% | 32.3 / 84.9 | 67 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 196,351 | 0 | C | G | 44.7% | 14.8 / 48.2 | 38 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 195,634 | 0 | C | T | 43.8% | 11.2 / 52.2 | 53 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,348,705 | 0 | A | G | 43.1% | 27.3 / 58.2 | 51 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 699,722 | 0 | A | G | 42.6% | 27.2 / 61.7 | 54 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 196,390 | 0 | T | C | 40.7% | 12.2 / 25.9 | 28 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,327 | 0 | A | C | 35.7% | 41.0 / 36.6 | 43 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,306 | 0 | T | C | 34.8% | 48.1 / 39.0 | 46 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,590 | 0 | T | C | 28.3% | 68.0 / 26.5 | 47 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,572 | 0 | G | A | 22.7% | 83.2 / 19.2 | 51 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,551 | 0 | C | G | 22.0% | 114.4 / 29.1 | 59 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,988,911 | 0 | A | . | 21.7% | 55.8 / 12.7 | 23 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Marginal new junction evidence (lowest skew 10 of 88 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5988771 | 20 (0.660) | 5 (0.170) | 5/274 | 3.2 | 19.3% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947 | 5988963 = | 23 (0.800) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 2050595 | 12 (0.390) | 3 (0.130) | 3/216 | 3.3 | 25.1% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 2050631 | 9 (0.400) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 5375384 | 37 (1.220) | 5 (0.170) | 4/274 | 3.6 | 11.9% | coding (57/1128 nt) | dnaJ | chaperone protein DnaJ |
| ? | NC_002947 | = 5375412 | 39 (1.360) | coding (29/1128 nt) | dnaJ | chaperone protein DnaJ | |||||
| * | ? | NC_002947 | = 4069793 | 22 (0.720) | 4 (0.140) | 4/276 | 3.6 | 16.7% | coding (2366/3099 nt) | mdtB | multidrug transporter membrane protein |
| ? | NC_002947 | = 4069841 | 19 (0.660) | coding (2318/3099 nt) | mdtB | multidrug transporter membrane protein | |||||
| * | ? | NC_002947 | 2929107 = | 29 (0.950) | 4 (0.140) | 4/276 | 3.6 | 13.0% | coding (2374/2472 nt) | PP_2565 | UvrD/REP family helicase |
| ? | NC_002947 | 2929164 = | 26 (0.900) | coding (2431/2472 nt) | PP_2565 | UvrD/REP family helicase | |||||
| * | ? | NC_002947 | = 2008575 | 39 (1.280) | 4 (0.140) | 4/272 | 3.6 | 10.4% | coding (388/1605 nt) | PP_1791 | aldolase/synthase |
| ? | NC_002947 | = 2008616 | 32 (1.120) | coding (347/1605 nt) | PP_1791 | aldolase/synthase | |||||
| * | ? | NC_002947 | = 1856923 | 35 (1.150) | 4 (0.140) | 4/274 | 3.6 | 11.9% | coding (102/2259 nt) | PP_1661 | dehydrogenase |
| ? | NC_002947 | = 1856949 | 26 (0.900) | coding (128/2259 nt) | PP_1661 | dehydrogenase | |||||
| * | ? | NC_002947 | = 5943622 | 29 (0.950) | 3 (0.120) | 3/246 | 3.7 | 11.6% | intergenic (+30/+55) | PP_5210/PP_5211 | alcohol dehydrogenase/ChaC‑related protein |
| ? | NC_002947 | = 5943643 | 21 (0.810) | intergenic (+51/+34) | PP_5210/PP_5211 | alcohol dehydrogenase/ChaC‑related protein | |||||
| * | ? | NC_002947 | 4627118 = | NA (NA) | 5 (0.170) | 4/280 | 3.7 | 24.4% | coding (386/1533 nt) | PP_4091 | transposase |
| ? | NC_002947 | 4627143 = | 16 (0.530) | coding (361/1533 nt) | PP_4091 | transposase | |||||
| * | ? | NC_002947 | 4586034 = | 10 (0.330) | 3 (0.120) | 3/246 | 3.7 | 29.3% | intergenic (+117/+98) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 4586105 = | 6 (0.230) | intergenic (+188/+27) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||