mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 32.8% | 74.4 / 48.7 | 64 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 21.7% | 216.7 / 26.5 | 117 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 27 (0.260) | 24/480 | 3.6 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 29 (0.270) | 22/488 | 4.1 | 98.3% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 1 (0.010) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1096961 = | 81 (0.750) | 35 (0.480) | 8/336 | 6.0 | 37.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 64 (0.880) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 3619878 = | NA (NA) | 5 (0.050) | 5/478 | 9.8 | 100% | coding (687/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619892 = | 0 (0.000) | coding (701/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 2765420 = | 107 (1.000) | 3 (0.030) | 3/408 | 10.0 | 3.4% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 81 (0.920) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4524790 = | 144 (1.340) | 4 (0.040) | 4/476 | 10.4 | 2.9% | coding (221/906 nt) | yjhH | putative lyase/synthase |
| ? | NC_000913 | 4524835 = | 132 (1.280) | coding (176/906 nt) | yjhH | putative lyase/synthase | |||||
| * | ? | NC_000913 | 2796365 = | 113 (1.050) | 3 (0.030) | 3/476 | 11.1 | 2.7% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796386 = | 111 (1.080) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | 2875690 = | 119 (1.110) | 4 (0.040) | 3/482 | 11.2 | 3.3% | coding (640/909 nt) | cysD | sulfate adenylyltransferase, subunit 2 |
| ? | NC_000913 | 2875715 = | 119 (1.140) | coding (615/909 nt) | cysD | sulfate adenylyltransferase, subunit 2 | |||||
| * | ? | NC_000913 | = 1432648 | NA (NA) | 4 (0.040) | 3/480 | 11.2 | 6.1% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | NC_000913 | 1634576 = | 64 (0.600) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fibre assembly protein | |||||
| * | ? | NC_000913 | 285874 = | 125 (1.160) | 4 (0.040) | 3/480 | 11.2 | 3.2% | coding (480/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | NC_000913 | 285896 = | 123 (1.180) | coding (502/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||