mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 34.4% | 75.1 / 49.0 | 67 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 29.1% | 58.2 / 27.5 | 56 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 21.8% | 70.9 / 22.1 | 56 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.5% | 110.6 / 28.6 | 66 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 70 (0.680) | 16 (0.210) | 9/418 | 5.0 | 24.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 51 (0.680) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 15 (0.150) | 13/562 | 5.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 2947467 | 56 (0.540) | 4 (0.050) | 3/412 | 7.9 | 11.1% | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | 2947688 = | 24 (0.330) | intergenic (+5/+69) | metV/amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase | |||||
| * | ? | NC_000913 | = 4491815 | 110 (1.100) | 4 (0.040) +GCCATCAG |
3/544 | 9.5 | 3.5% | coding (711/1320 nt) | idnT | L‑idonate and D‑gluconate transporter |
| ? | NC_000913 | 4491816 = | 111 (1.070) | coding (710/1320 nt) | idnT | L‑idonate and D‑gluconate transporter | |||||
| * | ? | NC_000913 | = 66645 | 113 (1.090) | 3 (0.030) | 3/540 | 9.5 | 2.6% | noncoding (81/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 66816 = | 117 (1.210) | intergenic (‑266/+19) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase | |||||
| * | ? | NC_000913 | = 4168745 | 53 (0.510) | 3 (0.030) | 3/562 | 9.7 | 4.6% | noncoding (105/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4210139 | 72 (0.720) | noncoding (97/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3625020 | 136 (1.320) | 3 (0.030) | 3/572 | 9.8 | 2.2% | coding (643/1137 nt) | yhhI | putative transposase |
| ? | NC_000913 | 3625029 = | 134 (1.310) | coding (652/1137 nt) | yhhI | putative transposase | |||||
| * | ? | NC_000913 | = 4229375 | 114 (1.110) | 3 (0.030) | 3/576 | 9.9 | 2.6% | intergenic (+13/+78) | yjbB/pepE | putative Na+/Pi‑cotransporter/peptidase E, alpha‑aspartyl dipeptidase |
| ? | NC_000913 | 4229379 = | NA (NA) | noncoding (4/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3977366 | 95 (0.920) | 3 (0.030) | 3/576 | 9.9 | 3.1% | coding (1089/1251 nt) | wzxE | O‑antigen translocase |
| ? | NC_000913 | 3977370 = | 90 (0.870) | coding (1093/1251 nt) | wzxE | O‑antigen translocase | |||||
| * | ? | NC_000913 | = 756221 | 98 (0.950) | 3 (0.030) | 3/574 | 9.9 | 3.0% | coding (315/1767 nt) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| ? | NC_000913 | 756228 = | 100 (0.970) | coding (322/1767 nt) | sdhA | succinate dehydrogenase, flavoprotein subunit | |||||