breseq  version 0.27.1  revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp [crl] [crl]
RA 668,742 C→G E99Q (GAA→CAA)  rsfS ← ribosomal silencing factor
RA 2,173,363 Δ2 bp intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,513,351 C→A L104M (CTG→ATG)  nupC → nucleoside (except guanosine) transporter
RA 2,866,716 C→A G279V (GGT→GTT)  rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 3,440,176 G→A T285I (ACC→ATC)  rpoA ← RNA polymerase, alpha subunit
RA 3,560,455 +G intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 4,078,128 T→G L227R (CTG→CGG)  yiiD → GNAT family putative N‑acetyltransferase
RA 4,105,057 C→T R205H (CGT→CAT)  cpxR ← response regulator in two‑component regulatory system with CpxA
RA 4,160,854 C→A intergenic (‑64/‑270) sthA ← / → fabR pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB
MC JC 4,233,804 1557 bp→83 bp coding (47‑1603/1650 nt) pgi → glucosephosphate isomerase
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978346 1979697 1352 42 [41] [41] 42 insB1–insA insB1, insA
* * ÷ NC_000913 2068279 2068699 421 42 [41] [41] 42 [yoeH]–[yoeA] [yoeH], [yoeA]
* * ÷ NC_000913 2468992 2470738 1747 43 [41] [40] 42 [gtrB]–gtrS [gtrB], gtrS
* * ÷ NC_000913 2785857 2786688 832 42 [41] [41] 46 [ygaQ] [ygaQ]
* * ÷ NC_000913 2994850 2995621 772 42 [41] [40] 42 [ygeK]–[ygeN] [ygeK], [ygeN]
* * ÷ NC_000913 3286958 3287442 485 42 [39] [41] 42 [agaI]–[yraH] [agaI], [yraH]
* * ÷ NC_000913 3769428 3770250 823 43 [40] [41] 42 [yibV]–[yibH] [yibV], yibV, yibU, yibU, [yibH]
* * ÷ NC_000913 3796820 3800338 3519 46 [39] [38] 42 [waaC]–[waaY] [waaC], waaL, waaU, waaZ, [waaY]
* * ÷ NC_000913 3804063 3805258 1196 42 [41] [40] 43 [waaB]–[waaP] [waaB], waaS, [waaP]
* * ÷ NC_000913 4476378 4477235 858 44 [41] [39] 42 yjgL SopA‑central‑domain‑like hexapeptide repeat protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994980 (0.000)33 (0.330) 28/566 2.4 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein