mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.7% | 40.7 / 50.8 | 61 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 26.9% | 68.0 / 29.0 | 70 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 22.2% | 88.8 / 30.2 | 64 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 24 (0.250) | 21/558 | 3.5 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1096961 = | 67 (0.670) | 13 (0.180) | 6/414 | 6.4 | 19.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 58 (0.800) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1207805 | 96 (0.960) | 7 (0.070) | 7/542 | 7.6 | 7.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 93 (0.980) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 100 (1.000) | 7 (0.070) | 6/542 | 8.1 | 7.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 93 (0.980) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2878156 | 101 (1.010) | 3 (0.030) | 3/514 | 9.6 | 3.1% | intergenic (+538/+413) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2878281 = | 96 (1.070) | intergenic (+663/+288) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | 1465715 = | 101 (1.010) | 3 (0.030) | 3/562 | 10.2 | 2.9% | pseudogene (324/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | NC_000913 | = 1465711 | 99 (1.010) | pseudogene (320/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| * | ? | NC_000913 | = 2155458 | 100 (1.000) | 3 (0.030) | 3/572 | 10.3 | 2.9% | coding (196/3123 nt) | mdtB | multidrug efflux system, subunit B |
| ? | NC_000913 | 2155462 = | 101 (1.010) | coding (200/3123 nt) | mdtB | multidrug efflux system, subunit B | |||||
| * | ? | NC_000913 | = 511061 | 83 (0.830) | 3 (0.030) | 3/574 | 10.3 | 3.5% | coding (319/2505 nt) | copA | copper transporter |
| ? | NC_000913 | 511065 = | 83 (0.830) | coding (315/2505 nt) | copA | copper transporter | |||||