mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,013 | 0 | G | . | 69.2% | 98.2 / 93.5 | 65 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 25.8% | 75.7 / 28.8 | 66 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 23.8% | 113.3 / 15.1 | 65 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 22.7% | 89.3 / 24.9 | 66 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 10 (0.090) | 10/476 | 7.5 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 489915 | 123 (1.130) | 4 (0.040) | 4/476 | 10.6 | 3.4% | intergenic (+17/+195) | mscK/ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| ? | NC_000913 | = 489920 | 111 (1.050) | intergenic (+22/+190) | mscK/ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein | |||||
| * | ? | NC_000913 | 1242577 = | 113 (1.030) | 3 (0.030) | 3/456 | 11.0 | 2.8% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | NC_000913 | 1242595 = | 105 (1.040) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | NC_000913 | 4127239 = | 148 (1.360) | 3 (0.030) | 3/468 | 11.2 | 2.1% | intergenic (+14/+47) | rpmE/yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| ? | NC_000913 | 4127265 = | 134 (1.290) | intergenic (+40/+21) | rpmE/yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein | |||||
| * | ? | NC_000913 | = 3347014 | 167 (1.530) | 3 (0.030) | 3/488 | 11.4 | 1.8% | coding (437/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS |
| ? | NC_000913 | 3347018 = | 166 (1.530) | coding (441/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS | |||||