| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 288 (0.960) | 14 (0.050) | 11/142 | NT | 5.1% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 265 (1.000) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
AGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710436‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < USA300TCH1516_ALE/710552‑710463 AGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAA < 1:3256924/91‑1AGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAA < 1:1697222/91‑1AGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAA > 2:2780182/1‑91AGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGAAAAAAGAAAAATAAAAAAGTCGAAATAATCATGATGAAAAAAATAAA < 2:2148371/91‑1 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 1:1542511/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 1:4964755/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA < 2:2213753/91‑1 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 2:5270251/1‑91 ATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAAC > 1:833154/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:5073980/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:5859721/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 2:1707557/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:3584697/91‑1 TAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCG < 1:2380300/91‑1 TAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCG > 1:544729/1‑91 TAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCG < 2:2139787/91‑1 TAAAGAGTATTCCAATATATATGTATAAAATAGCCAAAGCAAAAAAAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCG < 2:5148232/91‑1 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACaga < 2:2210915/91‑4 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA < 2:3216361/91‑1 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA > 1:4709464/1‑91 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA > 1:210121/1‑91 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 2:4172898/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:545313/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG > 2:2503143/1‑91 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 2:4170872/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:665682/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:3028329/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:5013079/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATCACAAAAATAAAACCGAG < 1:4446638/91‑1 AAGAGAATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGACAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG > 2:5745822/1‑91 AGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGctt < 2:1804222/91‑4 ttgATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGG < 2:5179701/88‑1 TTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGG < 1:2175176/91‑1 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAGTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:5745822/91‑1 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:5599679/91‑1 TATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGAT < 2:3461995/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 2:4224018/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 2:1923037/91‑1 TGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTT < 1:3122388/91‑1 ATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCT < 1:2882624/91‑1 TAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTC < 1:744615/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 1:1666856/91‑1 AAATAACCAAAGCAAAAAAAAAAAAAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGG < 2:3585659/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:1653525/91‑1 ATAGACAAAGCAAAAAAAAAAATAAAAAAGGCGAAATAATCATGATGACTAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTT < 2:3948531/91‑1 aatAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGG < 1:4433087/88‑1 aagAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGC < 2:4948117/88‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT < 2:2332897/91‑1 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATTATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA > 2:284801/1‑91 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTTCTTTTGCTt > 2:284907/1‑90 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA > 1:543634/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 1:3006835/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 2:1110209/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 1:1375259/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 1:1728516/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT < 1:5620074/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTTTTTTTTTTTTTGCTTTGGCTATTT > 2:4748361/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 2:982716/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 2:3043847/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 2:3023434/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 1:226289/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 1:2661187/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:3897766/1‑91 GAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTA < 1:2545005/91‑1 GAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTA > 1:5543090/1‑91 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCTTTTTTTATTTTTCTTTTTGCTTTGTCTTTTTTct > 2:4358676/1‑89 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT > 2:5085537/1‑91 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT < 1:683143/91‑1 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT > 1:4299511/1‑91 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTT > 2:3572446/1‑74 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTT < 1:3572446/74‑1 GAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTTTCTATTTTATt > 2:5563756/1‑90 GAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA > 1:2094677/1‑91 AGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710436‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < USA300TCH1516_ALE/710552‑710463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |