BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 710532	288 (0.960)	14 (0.050)	11/142	NT	5.1%	intergenic (+25/+36)	tarA/tagH_1	N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH
*	?	USA300TCH1516_ALE	= 710552	265 (1.000)	14 (0.050)	11/142	NT	5.1%	intergenic (+45/+16)	tarA/tagH_1	N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH

Only 100 of 366 total aligned reads displayed.

GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA  >  USA300TCH1516_ALE/710462‑710642

gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt                                                                                            >  1:5079403/1‑91 (MQ=255)

 tataAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTc                                                                                           >  1:2094677‑M2/1‑90 (MQ=255)

       aTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtt                                                                                     >  1:3006835‑M2/1‑84 (MQ=255)

        tAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttt                                                                                    >  1:543634‑M2/1‑83 (MQ=255)

        tAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATAATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttt                                                                                    >  2:284801‑M2/1‑83 (MQ=255)

          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  >  1:944679/1‑91 (MQ=255)

          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  >  1:4257760/1‑91 (MQ=255)

          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  >  1:674652/1‑91 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 >  1:4432866/1‑91 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 <  1:4795506/91‑1 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 <  1:4602085/91‑1 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 <  1:3221625/91‑1 (MQ=255)

           acAAAGAAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 <  2:4870399/90‑1 (MQ=255)

             aaaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACAGAGGAAATCCTTAAATGGAGCTTCTCGGTTTTTTCg                                                                               >  2:5279515/1‑91 (MQ=255)

              aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAGAACCGAGGAAATCCTTAAATGGAGATTCTAGGTTTTTTCgg                                                                              >  2:5847065/1‑91 (MQ=255)

              aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg                                                                              <  2:4143021/91‑1 (MQ=255)

               aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt                                                                             >  2:3783731/1‑91 (MQ=255)

                 cAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt                                                                           <  1:4226307/91‑1 (MQ=255)

                   aaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTct                                                                                          >  2:3572446‑M2/1‑72 (MQ=255)

                    aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt                                                                        <  2:1791994/91‑1 (MQ=255)

                    aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt                                                                        >  1:4675613/1‑91 (MQ=255)

                      aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta                                                                      >  1:5011243/1‑91 (MQ=255)

                       gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa                                                                     <  1:140177/91‑1 (MQ=255)

                       gAAAAATAAAAAAGGCGAAATAATCATGAAGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa                                                                     <  2:395423/91‑1 (MQ=255)

                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata                                                                   >  1:4556245/1‑91 (MQ=255)

                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata                                                                   >  2:2547529/1‑91 (MQ=255)

                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata                                                                   <  1:593831/91‑1 (MQ=255)

                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTCCGGTTTCTTtaata                                                                   >  2:762034/1‑91 (MQ=255)

                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 <  2:2028425/91‑1 (MQ=255)

                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 <  1:51564/91‑1 (MQ=255)

                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 <  2:1470456/91‑1 (MQ=255)

                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 >  1:1374167/1‑91 (MQ=255)

                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 <  2:1643534/91‑1 (MQ=255)

                            aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg                                                                >  1:2517619/1‑91 (MQ=255)

                              aaaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGaa                                                              >  2:1424050/1‑91 (MQ=255)

                                 aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg                                                           <  2:4733708/91‑1 (MQ=255)

                                 aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg                                                           >  1:3659217/1‑91 (MQ=255)

                                    ggCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGa                                                        >  1:2818154/1‑91 (MQ=255)

                                      cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACt                                                      >  2:3828326/1‑91 (MQ=255)

                                      cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACt                                                      >  1:4081070/1‑91 (MQ=255)

                                       gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc                                                     <  2:2473983/91‑1 (MQ=255)

                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   >  2:2156594/1‑91 (MQ=255)

                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   >  2:627262/1‑91 (MQ=255)

                                          ataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATc                                                  >  1:173010/1‑91 (MQ=255)

                                          ataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATc                                                  >  1:1610553/1‑91 (MQ=255)

                                           taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 <  2:4984817/91‑1 (MQ=255)

                                             atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg                                               <  2:5026520/91‑1 (MQ=255)

                                             atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg                                               <  2:2674700/91‑1 (MQ=255)

                                              tCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgt                                              >  2:5324983/1‑91 (MQ=255)

                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            <  2:4179944/91‑1 (MQ=255)

                                                 tgatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttg                                           >  1:4013754/1‑91 (MQ=255)

                                                   atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTTGTTTTTTTTAATAACGAAGCGGGACTCATCGAgtttgtt                                         >  2:317401/1‑91 (MQ=255)

                                                    tgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgttt                                        <  1:4124168/91‑1 (MQ=255)

                                                     gaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTAGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTc                                       <  2:5404278/91‑1 (MQ=255)

                                                      aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt                                      <  2:5158632/91‑1 (MQ=255)

                                                      aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt                                      <  1:1047488/91‑1 (MQ=255)

                                                      aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTGTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt                                      <  1:5279515/91‑1 (MQ=255)

                                                       cAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 <  2:3031190/79‑1 (MQ=255)

                                                       cAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTa                                     <  1:1308281/91‑1 (MQ=255)

                                                        aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa                                    >  1:858167/1‑91 (MQ=255)

                                                        aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa                                    <  2:2340775/91‑1 (MQ=255)

                                                         aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa                                   <  1:1061410/91‑1 (MQ=255)

                                                           aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt                                 <  1:3382319/91‑1 (MQ=255)

                                                           aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt                                 >  2:4309419/1‑91 (MQ=255)

                                                           aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt                                 <  1:2706237/91‑1 (MQ=255)

                                                           aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt                                 <  1:247781/91‑1 (MQ=255)

                                                            aTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAGTc                                <  1:5554471/91‑1 (MQ=255)

                                                              aaaaCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCtt                              >  2:4412373/1‑91 (MQ=255)

                                                                aaCCGAGGAAATCCTTAAATGGAGATTCTCGGTATTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATCCtttt                            >  2:4708859/1‑91 (MQ=255)

                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  2:4027915/1‑91 (MQ=255)

                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  2:4609361/1‑91 (MQ=255)

                                                                  ccGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTg                          <  1:972785/91‑1 (MQ=255)

                                                                   cGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatttt                         <  1:1666856‑M2/91‑68 (MQ=255)

                                                                   cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt                         >  1:1976201/1‑91 (MQ=255)

                                                                   cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt                         <  2:1916190/91‑1 (MQ=255)

                                                                   cGAGGAAATCCTTAAATAGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt                         <  2:5639783/91‑1 (MQ=255)

                                                                     aGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTc                       <  1:2305903/91‑1 (MQ=255)

                                                                      ggAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCg                      <  1:2607621/91‑1 (MQ=255)

                                                                       gAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCgg                     <  2:963497/91‑1 (MQ=255)

                                                                        aaaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGc                    <  1:3512733/91‑1 (MQ=255)

                                                                        aaaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGc                    <  1:5644405/91‑1 (MQ=255)

                                                                         aaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCt                   >  1:3678110/1‑91 (MQ=255)

                                                                         aaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCt                   >  2:2864617/1‑91 (MQ=255)

                                                                           tCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCttt                 >  1:3869234/1‑91 (MQ=255)

                                                                            ccTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacataaa                <  1:2175176‑M2/91‑77 (MQ=255)

                                                                            ccTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTg                <  1:4313072/91‑1 (MQ=255)

                                                                            ccTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTg                <  2:2785821/91‑1 (MQ=255)

                                                                             cTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTgg               <  1:3569128/91‑1 (MQ=255)

                                                                               tAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAt             <  1:1223113/91‑1 (MQ=255)

                                                                                aaaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACTAAGCGGGACTCCTCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt            <  1:4883246/91‑1 (MQ=255)

                                                                                 aaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAttt           <  1:1811782/91‑1 (MQ=255)

                                                                                   tGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCt         >  1:3106308/1‑91 (MQ=255)

                                                                                     gagaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttt       <  2:1235585/91‑1 (MQ=255)

                                                                                     gagaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttt       >  2:556098/1‑91 (MQ=255)

                                                                                     gagaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttt       <  1:3049566/91‑1 (MQ=255)

                                                                                      agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt      <  2:4452110/91‑1 (MQ=255)

                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     <  1:5486230/91‑1 (MQ=255)

                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     <  2:3432509/91‑1 (MQ=255)

                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     <  2:3639698/91‑1 (MQ=255)

                                                                                         ttCTCGGGTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaa   <  1:4649259/91‑1 (MQ=255)

GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA  >  USA300TCH1516_ALE/710462‑710642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.