| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2319260 | 4 (0.010) | 9 (0.030) | 4/148 | NT | 83.0% | coding (178/345 nt) | USA300HOU_RS15290 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2319266 | 0 (0.000) | coding (184/345 nt) | USA300HOU_RS15290 | hypothetical protein | |||||
TTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2319165‑2319260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgaaCTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTTT < USA300TCH1516_ALE/2319266‑2319177 TTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCAC > 2:4827681/1‑91TTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCAC < 2:3530377/91‑1TTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCAC > 1:4727991/1‑91 TTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACT > 2:959810/1‑91 TTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACT > 1:164100/1‑91 TTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACT < 1:2263342/91‑1 TCTGAACCAGAAACGCAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTC < 2:4531623/91‑1 TCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTC > 1:1136349/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 1:1889391/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 2:2886870/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 2:2884586/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 2:2351054/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 2:2320865/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 2:2290483/1‑91 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG < 1:9703/91‑1 CTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTCTTGGATTTATGAAGGCTATTTTGGGTTTCACTCG > 1:5514284/1‑91 TGAACCAGAAACGAAAAAAATCTATAGTCAAAGAGAAATTGATGTAGAGCCTGTTTTTTTTTTTATGAAGGCTATTTTGGGTTTCACTCGA > 2:562343/1‑91 TGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGA > 2:5222557/1‑91 TGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGA > 1:3500314/1‑91 TGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGA < 2:3345371/91‑1 TGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGA > 2:3962082/1‑91 ggttCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA > 1:2306515/5‑91 GAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAACTTGATGTAGAGCCTGTTTTTTGATTTATGAAGGCTATTTTGGGTTTCACTCGAA > 2:3139949/1‑91 GAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA > 2:5631151/1‑91 ACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACT < 1:1530990/91‑1 ACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACT < 2:204598/91‑1 ACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACT < 1:1530974/91‑1 aAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACTGA < 2:1277032/90‑1 AAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTAACTCGAACTGACgt < 1:4797025/91‑3 AACGAAAAACATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGCTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACTGAC‑A‑TT < 1:5614213/91‑1 AACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACTGAC‑A‑TT < 1:2487070/91‑1 TTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGGA‑TGTCTG‑TCCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGTTC > 1:125184/1‑91 GGATTTATGAAGGCTATTTTGGGTTTCACTCGGACAGAC‑A‑TCCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGTTCCACAT < 2:2950528/91‑1 GGCTATTTTGGGTTTCACTCGAA‑TGTC‑AGTTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTTTT > 2:4414473/1‑91 GGCTATTTTGGGTTTAACTCGAAC‑GTC‑AGTTCGAGTTAAACCCAAAATAGCCTTCATAAAGCCAAAAACAGGCTCTACATCAATTTTTCTT > 1:4523534/1‑91 GGCTATTTTGGGTTTAACTCGAAC‑GTC‑AGTTCGAGTTAAACCCAAAATAGCCTTCATAAAGCCAAAAACAGGCTCTACATCAATTTTTCTT > 1:4523429/1‑91 ATTTTGGGTTTAACTCGAAC‑GTC‑AGTTCGAGTTAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGAC > 1:3883179/1‑91 TTTGGGTTTCACTCGAA‑TGTC‑AGTTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAGCAGGCTCTACATCAATTTTTCTTTTACTA > 2:4553437/1‑91 CTCGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTT < 1:4150874/91‑1 TCGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTC < 2:3854044/91‑1 TCGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTC < 2:2323606/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 1:2071306/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 1:1094066/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 2:3052775/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 1:1667679/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 1:5247491/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 1:5250597/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG > 2:1461359/1‑91 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG < 2:1741072/91‑1 CGAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCG > 2:309027/1‑91 GAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGT < 1:5804400/91‑1 GAACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGT > 2:5412112/1‑91 AACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTT > 2:2228966/1‑91 AACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTT < 1:4678804/91‑1 AACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTT < 1:2356379/91‑1 AACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTT < 2:5722721/91‑1 ACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTTT > 2:4263187/1‑91 ACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTTT > 1:1475553/1‑91 ACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTTT > 2:1930107/1‑91 ACTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTTT > 1:3801173/1‑91 TTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2319165‑2319260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgaaCTGAC‑A‑TTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAACAGGCTCTACATCAATTTTTCTTTGACTATAGATTTTTTTCGTTT < USA300TCH1516_ALE/2319266‑2319177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |