| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2319260 | 4 (0.010) | 9 (0.030) | 4/148 | NT | 83.0% | coding (178/345 nt) | USA300HOU_RS15290 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2319266 | 0 (0.000) | coding (184/345 nt) | USA300HOU_RS15290 | hypothetical protein | |||||
GAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACAT > USA300TCH1516_ALE/2319176‑2319355 | gaaaagaaaaAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAg < 2:357749/91‑1 (MQ=21)gAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAg < 1:3575546/91‑1 (MQ=37)gAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAg > 2:5352858/1‑91 (MQ=37)gAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAg < 1:2948524/91‑1 (MQ=37) aaaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGt > 1:1475553‑M2/1‑90 (MQ=255) aaaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGt > 2:1930107‑M2/1‑90 (MQ=255) aaaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGt > 2:4263187‑M2/1‑90 (MQ=255) aaaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGt > 1:3801173‑M2/1‑90 (MQ=255) aaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGtt < 1:4678804‑M2/91‑3 (MQ=255) aaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGtt > 2:2228966‑M2/1‑89 (MQ=255) aaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGtt < 1:2356379‑M2/91‑3 (MQ=255) aaCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGtt < 2:5722721‑M2/91‑3 (MQ=255) aCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttc > 2:5412112‑M2/1‑88 (MQ=255) aCGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttc < 1:5804400‑M2/91‑4 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 1:1094066‑M2/91‑5 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg > 2:309027‑M2/1‑87 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 2:3052775‑M2/91‑5 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 2:1741072‑M2/91‑5 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg > 2:1461359‑M2/1‑87 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 1:1667679‑M2/91‑5 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 1:5250597‑M2/91‑5 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 1:5247491‑M2/91‑5 (MQ=255) cGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcg < 1:2071306‑M2/91‑5 (MQ=255) gAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcga < 2:3854044‑M2/91‑6 (MQ=255) gAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcga < 2:2323606‑M2/91‑6 (MQ=255) aaaaaaaTCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGttcgag < 1:4150874‑M2/91‑7 (MQ=255) taGTAAAAGAAAAATTGATGTAGAGCCTGCTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACT‑GACAtcgagtgaaacccaaa > 2:4553437‑M2/1‑75 (MQ=255) gTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTAACTCGAACT‑GAC‑Gttcgagttaaacccaaaat > 1:3883179‑M2/1‑72 (MQ=255) aaaaaaaaTTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAACT‑GACAtcgagtgaaacccaaaatagcc > 2:4414473‑M2/1‑69 (MQ=255) aaGAAAAATTGATGTAGAGCCTGTTTTTGGCTTTATGAAGGCTATTTTGGGTTTAACTCGAACT‑GAC‑Gttcgagttaaacccaaaatagcc > 1:4523534‑M2/1‑68 (MQ=255) aaGAAAAATTGATGTAGAGCCTGTTTTTGGCTTTATGAAGGCTATTTTGGGTTTAACTCGAACT‑GAC‑Gttcgagttaaacccaaaatagcc > 1:4523429‑M2/1‑68 (MQ=255) aTGTGGAACCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGGA‑T‑GTCTGtccgagtgaaacccaaaatagccttcataaatcc < 2:2950528‑M2/91‑35 (MQ=255) gaaCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGGA‑CAGACAccgagtgaaacccaaaatagccttcataaatccaaaaa > 1:125184‑M2/1‑53 (MQ=255) aa‑T‑GTCAGttcgagtgaaacccaaaatagccttcataaatccaaaagcaggctctacatcaatttttctttgactatagatgtttttcgtt < 1:5614213‑M2/91‑84 (MQ=255) aa‑T‑GTCAGttcgagtgaaacccaaaatagccttcataaatccaaaaacaggctctacatcaatttttctttgactatagatttttttcgtt < 1:2487070‑M2/91‑84 (MQ=255) acgtcAGttcgagttaaacccaaaatagccttcataaatccaaaaacaggctctacatcaatttttctttgactatagatttttttcgttt < 1:4797025‑M2/89‑85 (MQ=255) tCAGttcgagtgaaacccaaaatagccttcataaatccaaaaacaggctctacatcaatttttctttgactatagatttttttcgtttctt < 2:1277032‑M2/91‑88 (MQ=255) aGttcgagtgaaacccaaaatagccttcataaatccaaaaacaggctctacatcaatttttctttgactatagatttttttcgtttctggt < 2:204598‑M2/91‑90 (MQ=255) aGttcgagtgaaacccaaaatagccttcataaatccaaaaacaggctctacatcaatttttctttgactatagatttttttcgtttctggt < 1:1530990‑M2/91‑90 (MQ=255) aGttcgagtgaaacccaaaatagccttcataaatccaaaaacaggctctacatcaatttttctttgactatagatttttttcgtttctggt < 1:1530974‑M2/91‑90 (MQ=255) | GAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAA‑T‑GTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACAT > USA300TCH1516_ALE/2319176‑2319355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |