| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2573677 = | 245 (0.820) | 13 (0.050) | 8/138 | NT | 5.5% | intergenic (‑203/+91) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD |
| ? | USA300TCH1516_ALE | 2573715 = | 239 (0.930) | intergenic (‑241/+53) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD | |||||
TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA > USA300TCH1516_ALE/2573715‑2573804 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT > 1:3267627/1‑91TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT < 2:3732736/91‑1TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT > 1:5283720/1‑91TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT > 2:2379132/1‑91TAATATGTAATAGTAGAAGATGTTTATAATGTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATACTCTT > 2:4308309/1‑91 AATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTT > 2:4480510/1‑91 AATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTT < 1:2865860/91‑1 AATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTT > 2:3160257/1‑91 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG < 2:4957648/91‑1 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG > 2:3306730/1‑91 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA < 1:665239/91‑1 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA > 1:5587993/1‑91 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:4283658/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:3977296/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:3121556/91‑1 TGTAATATTAGAAGATGTTTATAATTTAGCGATTTCGTTAAAAAAAAAATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 2:3080858/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 2:2096061/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT > 1:2607936/1‑91 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 1:3843711/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA < 1:581227/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 2:999736/1‑91 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 1:2272708/1‑91 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 1:1457229/1‑91 TAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 2:1975449/91‑1 TAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 2:2881772/91‑1 TAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 1:3556028/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC > 1:2150158/1‑91 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 1:3892838/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC > 1:3367228/1‑91 ATAGTAGAAGATGTTTATAATTTGGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC < 2:1686580/91‑1 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC > 1:4731210/1‑91 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC < 2:1503185/91‑1 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC < 1:5085378/91‑1 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC > 1:3129201/1‑91 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT > 1:4921589/1‑91 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT > 1:4922197/1‑91 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT > 2:4499810/1‑91 TCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAA > 1:2707691/1‑91 ATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTA > 1:456204/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATATTCTACTA > 2:1439294/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 2:1626299/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 1:2685778/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 1:1556634/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 2:5116677/1‑91 AGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTA > 1:4301251/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 2:1408881/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 2:2076692/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 1:2158381/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 1:4833832/1‑91 ATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCG > 1:4751140/1‑91 TTNAGTAGCCTCATTTTTTATNAATCNTGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTNCATATTAATACTTTGCGGCCGATG < 1:5023853/91‑1 TTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATG > 2:3171375/1‑91 TTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATG < 1:1702644/91‑1 TTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATG > 2:2813486/1‑91 TTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATG > 1:1082668/1‑91 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA > 1:5481236/1‑91 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA > 2:1954545/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGCTGAT > 2:3403709/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:1585858/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:3302435/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT > 1:1913196/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT > 2:2692597/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT > 1:1437128/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:1798848/91‑1 AGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATT > 1:2102359/1‑91 AGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCCAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATT > 1:5673301/1‑91 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA < 2:696080/91‑1 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA > 2:1274893/1‑91 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 2:5130609/1‑91 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG < 1:3798673/91‑1 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG < 1:3799722/91‑1 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 2:4089206/1‑91 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 2:1813275/1‑91 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:3989487/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 2:5459856/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT > 1:1334496/1‑91 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:4957648/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:1461299/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:5493699/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 2:247503/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTT < 2:1011596/73‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTT > 1:1011596/1‑73 CCTCATTTTTTATTATTTTTTAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:1197468/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT < 1:3837256/91‑1 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT < 1:646655/91‑1 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT < 1:3591171/91‑1 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 1:1735842/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:761245/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:864548/1‑91 CTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTG < 2:3644300/91‑1 TCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCGACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA < 2:5419862/91‑1 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA > USA300TCH1516_ALE/2573715‑2573804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |