BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2573677 =	245 (0.820)	13 (0.050)	8/138	NT	5.5%	intergenic (‑203/+91)	norB_5/opuCD	Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD
*	?	USA300TCH1516_ALE	2573715 =	239 (0.930)	13 (0.050)	8/138	NT	5.5%	intergenic (‑241/+53)	norB_5/opuCD	Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD

Only 100 of 355 total aligned reads displayed.

ATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGAT  >  USA300TCH1516_ALE/2573625‑2573805

aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc                                                                                            <  1:2955087/91‑1 (MQ=255)

aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc                                                                                            >  1:5561230/1‑91 (MQ=255)

 tGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCa                                                                                           <  2:4103229/91‑1 (MQ=255)

 tGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCa                                                                                           <  1:653561/91‑1 (MQ=255)

   ataataATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTGGAGCTCCTTGAGTAGCCTCAtt                                                                                         <  2:4465475/91‑1 (MQ=255)

     aataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttt                                                                                       >  1:5298573/1‑91 (MQ=255)

     aataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTAATCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttt                                                                                       >  2:2846778/1‑91 (MQ=255)

      ataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttttt                                                                                      <  2:5068225/91‑1 (MQ=255)

      ataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttttt                                                                                      >  2:3256627/1‑91 (MQ=255)

       taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt                                                                                     >  2:404560/1‑91 (MQ=255)

         atTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtat                                                                                   >  1:1704735/1‑91 (MQ=255)

           tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaa                                                                                 >  2:2661426/1‑91 (MQ=255)

           tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaa                                                                                 <  2:1464090/91‑1 (MQ=255)

           tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaa                                                                                 >  2:3563574/1‑91 (MQ=255)

            gCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa                                                                                <  1:2115600/91‑1 (MQ=255)

            gCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa                                                                                <  2:2397308/91‑1 (MQ=255)

            gCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACGCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa                                                                                <  1:4562230/91‑1 (MQ=255)

                ttttAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCAt                                                                            <  1:2006309/91‑1 (MQ=255)

                  tttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGa                                                                          >  1:2707691‑M1/35‑91 (MQ=255)

                  ttAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGa                                                                          <  1:2716173/91‑1 (MQ=255)

                   tAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGaa                                                                         >  2:4212024/1‑91 (MQ=255)

                    aGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGaaa                                                                        <  1:4502513/91‑1 (MQ=255)

                     gtgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAAc                                                                       <  1:3512448/91‑1 (MQ=255)

                      tgtAAACGCATACGAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACg                                                                      >  1:3753829/1‑91 (MQ=255)

                      tgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCCAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACg                                                                      >  1:1784087/1‑91 (MQ=255)

                         aaaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGaaa                                                                   >  2:2971226/1‑91 (MQ=255)

                          aaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAAt                                                                  <  2:5636383/91‑1 (MQ=255)

                             gCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGc                                                               <  1:4099170/91‑1 (MQ=255)

                               aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa                                                             <  1:3467012/91‑1 (MQ=255)

                               aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa                                                             <  1:3288398/91‑1 (MQ=255)

                               aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa                                                             <  1:4248171/91‑1 (MQ=255)

                               aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa                                                             <  1:1178756/91‑1 (MQ=255)

                               aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa                                                             >  2:3644592/1‑91 (MQ=255)

                                 aCAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGCGTAGCCTCATTTTTTATAAATCATGAAACAAAATCGCTaaa                                                           >  2:5851722/1‑91 (MQ=255)

                                 aCAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTaaa                                                           >  2:2781683/1‑91 (MQ=255)

                                  cAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAAt                                                          <  1:1870729/91‑1 (MQ=255)

                                    aaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATta                                                        >  2:3025628/1‑91 (MQ=255)

                                    aaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATta                                                        >  1:4335453/1‑91 (MQ=255)

                                     acacAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtat                                                       <  2:4305142/91‑1 (MQ=255)

                                     acacAACCTATAAAAAGGCTACTCAAAGATCATTTGAGCTCCTTGAGTAACCTCATCTTTTATCAATCATGAAACGAAATCGCCAACTtat                                                       >  2:2247456/1‑91 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                      <  1:2215392/91‑1 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                      >  1:5040620/1‑91 (MQ=255)

                                        caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCGTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATaaa                                                    <  2:2138908/91‑1 (MQ=255)

                                        caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCACCTTGAGTAGCCTCATTTCATATAAATCATGAACCGAAATCGCTAAATTATaaa                                                    >  1:1048401/1‑91 (MQ=255)

                                         aaCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAAc                                                   >  1:4818965/1‑91 (MQ=255)

                                          aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa                                                  >  1:2927413/1‑91 (MQ=255)

                                          aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa                                                  >  2:5800499/1‑91 (MQ=255)

                                           ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt                                                 <  2:191902/91‑1 (MQ=255)

                                           ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt                                                 <  1:4028166/91‑1 (MQ=255)

                                              ataAAAAGGCTACTCAAAGATTATTTGAGATCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCACTAAATTATAATCAtgat                                              >  1:4897744/1‑88 (MQ=255)

                                                   aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact                                         >  1:4160416/1‑91 (MQ=255)

                                                   aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact                                         <  1:493418/91‑1 (MQ=255)

                                                     GGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAt                                       <  1:5085378‑M1/91‑1 (MQ=255)

                                                     GGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCCAAATTATAAACATCTTCTACTAt                                       <  2:1686580‑M1/91‑1 (MQ=255)

                                                      GCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAtt                                      <  1:3892838‑M1/91‑1 (MQ=255)

                                                       CTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTa                                     <  2:1975449‑M1/91‑1 (MQ=255)

                                                       CTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTa                                     <  1:3556028‑M1/91‑1 (MQ=255)

                                                        TACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTAc                                    >  1:2272708‑M1/1‑91 (MQ=255)

                                                         ACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATTTTTTTTTTAACGAAATCGCTAAATTATAAACATCTTCTAATATTACa                                   <  2:3080858‑M1/91‑1 (MQ=255)

                                                         ACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACa                                   >  1:2607936‑M1/1‑91 (MQ=255)

                                                         ACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACa                                   <  1:3843711‑M1/91‑1 (MQ=255)

                                                         ACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACa                                   <  2:2096061‑M1/91‑1 (MQ=255)

                                                          CTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACat                                  <  1:3121556‑M1/91‑1 (MQ=255)

                                                            CAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                                <  2:4957648‑M1/91‑1 (MQ=255)

                                                            CAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                                >  2:3306730‑M1/1‑91 (MQ=255)

                                                             aaggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAtt                               >  1:1556634‑M2/30‑91 (MQ=255)

                                                              AAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTa                              >  1:3267627‑M1/1‑91 (MQ=255)

                                                                 attattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATa                           <  2:3415510/91‑1 (MQ=255)

                                                                 attattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATa                           <  2:4546786/91‑1 (MQ=255)

                                                                  ttattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATAc                          <  1:2360460/91‑1 (MQ=255)

                                                                   tattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACt                         >  1:36376/1‑91 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        >  1:793996/1‑91 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        >  1:2855757/1‑91 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        <  2:1360845/91‑1 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        >  1:1651274/1‑91 (MQ=255)

                                                                     tttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTTTAAACATCTTCTACTATTACATATTAATACttt                       <  1:5819904/91‑1 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      >  1:5722265/1‑91 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      >  2:5565621/1‑91 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      <  2:3811457/91‑1 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      >  2:5334111/1‑91 (MQ=255)

                                                                       tGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGc                     >  1:5439985/1‑91 (MQ=255)

                                                                        gAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCg                    >  1:145985/1‑91 (MQ=255)

                                                                        ataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCg                    >  1:4751140‑M2/19‑91 (MQ=255)

                                                                         aGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCgg                   <  2:4747671/91‑1 (MQ=255)

                                                                         aGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCgg                   >  1:1936277/1‑91 (MQ=255)

                                                                         aGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCgg                   <  1:1316815/91‑1 (MQ=255)

                                                                         aGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCgg                   <  2:3144496/91‑1 (MQ=255)

                                                                             ccTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCga               >  2:2543739/1‑91 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgat              >  1:2479166/1‑91 (MQ=255)

                                                                                 gagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat           >  1:1437128‑M2/10‑91 (MQ=255)

                                                                                 gagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat           >  2:2692597‑M2/10‑91 (MQ=255)

                                                                                 gagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat           <  2:1585858‑M2/82‑1 (MQ=255)

                                                                                  agtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAtt          >  1:2102359‑M2/9‑91 (MQ=255)

                                                                                    tagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAg        >  2:5130609‑M2/7‑91 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        <  2:1011596‑M2/69‑1 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        >  1:1011596‑M2/5‑73 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt      <  1:5493699‑M2/87‑1 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt      <  2:5459856‑M2/87‑1 (MQ=255)

                                                                                       cctCATTTTTTATTATTTTTTAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt     >  2:1197468‑M2/4‑91 (MQ=255)

                                                                                       cctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt     >  2:761245‑M2/4‑91 (MQ=255)

ATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGAT  >  USA300TCH1516_ALE/2573625‑2573805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.