| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 34 = | 388 (0.370) | 25 (0.030) | 14/146 | NT | 5.1% | intergenic (–/‑198) | –/repA | –/replication protein A |
| ? | CP000731 | 65 = | 575 (0.610) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
Only 100 of 248 total aligned reads displayed.
TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 TTATTCATTATNTAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:175898/91‑1TTATTCATTATATAATACGAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:5751391/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:1130804/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:5843241/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:4944451/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:4856056/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:3884705/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:2739455/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:1976083/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:1377739/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:2436140/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:19860/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTGTTACCAAACCCCGACTATTACCAGTAGTTGG < 1:5726496/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:3961129/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:1108587/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG > 2:5674825/1‑91 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG > 2:5369173/1‑91 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:4955036/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAGCGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:3040767/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCTCGACTATTACCAGTAGTTGGG > 2:5484233/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:2222559/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:2566234/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:2922216/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:3018441/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:1673490/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:1857649/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:2530218/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:4107347/1‑91 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 2:3066899/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 1:4177802/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 2:3229508/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 2:1725343/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 1:2896870/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:3796400/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 1:2099/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:4559785/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 1:1274956/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:4995603/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:4203447/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:4048631/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:4100743/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:1609752/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 1:2914605/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT < 2:3186542/91‑1 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 1:396847/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 2:913578/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT < 2:5044027/91‑1 TTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTAT > 2:3991132/1‑91 ACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATAT > 2:4330306/1‑91 ACCCCGACTATTACCAGTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGA > 1:4353175/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 2:2366536/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 2:2434761/1‑91 ACTATTACCAGTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 2:5209609/1‑91 CTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATAT > 2:823842/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 2:1121960/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTT > 2:3311620/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTT > 1:3695385/1‑91 TACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTA > 1:1359281/1‑91 GGGTTTTGGTAATAAAACGTTTAGAAACTGTCTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:5444043/91‑1 GGGGTTTTGTAATAAAACGTTTAGAAACTCTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:3573363/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTGTTATATAATGAATAATATCTTAGTG > 1:2254388/1‑83 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTGTTATATAATGAATAATATCTTAGTG < 2:2254388/83‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:939788/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:2739831/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:304374/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:3137632/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:5760506/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:5178441/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:650278/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:1160251/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:1508528/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:356012/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:1777751/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:2530670/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:152138/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:3112237/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2860871/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:23374/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA < 1:3233850/75‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:3374807/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 2:4610141/1‑91 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:4130220/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:3611733/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 1:1455252/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTACATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 1:4487630/1‑91 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 2:1890319/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 2:2554014/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA > 1:5126810/1‑91 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 2:2101481/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 2:1964792/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 1:502870/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:4615329/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:4645224/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC < 1:4418768/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:3860668/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:368611/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 2:1913940/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC < 2:2662374/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:5314367/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAGTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:4485168/1‑91 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |