New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 1975 =NA (NA)133 (0.020) 26/138 NT 5.3% intergenic (+208/+118) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 2042 = 2759 (0.270)intergenic (+275/+51) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein

Only 100 of 7262 total aligned reads displayed.

GAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGT  >  NC_012417/1885‑2050
                                                                                          |                                                                           
 aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTA                                                                            >  2:4699144‑M1/1‑91 (MQ=255)
  agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAA                                                                           <  1:1854731‑M1/91‑1 (MQ=255)
   gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAA                                                                          >  2:2673099‑M1/1‑91 (MQ=255)
   gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAA                                                                          <  2:2813116‑M1/91‑1 (MQ=255)
   gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAA                                                                          <  2:5164546‑M1/91‑1 (MQ=255)
    aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAAC                                                                         >  2:749207‑M1/1‑91 (MQ=255)
     aaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACT                                                                        <  1:493298‑M1/91‑1 (MQ=255)
      aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTT                                                                       >  1:5596924‑M1/1‑91 (MQ=255)
      aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTT                                                                       >  2:5602033‑M1/1‑91 (MQ=255)
        atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGC                                                                     >  2:1287676‑M1/1‑91 (MQ=255)
        atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGC                                                                     >  1:1985585‑M1/1‑91 (MQ=255)
         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                    >  1:1729115/1‑91 (MQ=255)
         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                    <  2:5496313/91‑1 (MQ=255)
         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                    >  1:4124111/1‑91 (MQ=255)
          atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                   >  2:4200365/1‑91 (MQ=255)
          atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                   >  1:5136801/1‑91 (MQ=255)
           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                  <  1:4715527/91‑1 (MQ=255)
           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                  <  2:3673222/91‑1 (MQ=255)
           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                  <  1:3348392/91‑1 (MQ=255)
           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                  >  1:2381088/1‑91 (MQ=255)
           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                  >  2:4602851/1‑91 (MQ=255)
            gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                 <  1:4840364‑M1/91‑1 (MQ=255)
             aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                >  1:2779540‑M1/1‑91 (MQ=255)
              ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                               <  1:4624803‑M1/91‑1 (MQ=255)
                  cATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGt                                                           >  2:2253201/1‑91 (MQ=255)
                   aTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                          >  2:3227225/1‑91 (MQ=255)
                    tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                         <  1:3256255/91‑1 (MQ=255)
                     gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGg                                                        >  1:4008782‑M2/1‑90 (MQ=255)
                     gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGg                                                        <  1:5244834‑M2/91‑2 (MQ=255)
                      aaGATAATAAGAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGgc                                                       >  1:5840171‑M2/1‑89 (MQ=255)
                      aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGgc                                                       <  1:3805559‑M2/91‑3 (MQ=255)
                      aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGgc                                                       <  2:1074657‑M2/91‑3 (MQ=255)
                       aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGgca                                                      >  2:5394008‑M2/1‑88 (MQ=255)
                       aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGgca                                                      >  1:1421854‑M2/1‑88 (MQ=255)
                        gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                     <  1:65216/91‑1 (MQ=255)
                         ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                    <  2:4806766/91‑1 (MQ=255)
                           aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                  <  2:2459763/91‑1 (MQ=255)
                            ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                 >  1:1315530/1‑91 (MQ=255)
                            ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                 <  2:1797307/91‑1 (MQ=255)
                            ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                 >  1:2066559/1‑91 (MQ=255)
                              aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                               >  1:4534462/1‑91 (MQ=255)
                              aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                               <  1:3912361/91‑1 (MQ=255)
                              aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                               >  1:286005/1‑91 (MQ=255)
                               aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                              >  1:5672579/1‑91 (MQ=255)
                               aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                              >  1:3133634/1‑91 (MQ=255)
                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                             <  1:433300/91‑1 (MQ=255)
                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                             <  2:4105535/91‑1 (MQ=255)
                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                             <  2:1424754/91‑1 (MQ=255)
                                   aTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                          <  1:3047105/91‑1 (MQ=40)
                                    tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTATCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                         <  1:2159699/91‑1 (MQ=255)
                                    tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                         <  1:2679805/91‑1 (MQ=255)
                                    tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                         <  1:1616342/91‑1 (MQ=40)
                                    tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                         >  1:35378/1‑91 (MQ=255)
                                      gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                       >  1:1106912/1‑91 (MQ=39)
                                      gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                       >  2:884755/1‑91 (MQ=39)
                                      gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                       <  1:2288712/91‑1 (MQ=38)
                                      gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                       >  1:5500714/1‑91 (MQ=39)
                                      gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGACAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                       >  2:3444149/1‑91 (MQ=255)
                                       acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                      >  2:1662465/1‑91 (MQ=37)
                                       acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                      >  2:5698144/1‑91 (MQ=38)
                                        cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                     >  2:5048296/1‑91 (MQ=37)
                                        cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                     <  2:3113080/91‑1 (MQ=37)
                                         gacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                    <  1:100088/91‑1 (MQ=35)
                                         gacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                    <  2:3018308/91‑1 (MQ=35)
                                          acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATtcggcttaatagctcacgctatgcc                                    <  1:2573131‑M1/91‑26 (MQ=255)
                                          acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                   <  2:5788768/91‑1 (MQ=34)
                                          acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                   >  2:3884552/1‑91 (MQ=34)
                                          acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                   >  2:4307591/1‑91 (MQ=34)
                                           cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                  <  1:4421133/91‑1 (MQ=34)
                                           cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                  >  2:3566528/1‑91 (MQ=34)
                                           cgCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGgtcggcttaatagctcacgctatgcc                                  <  1:761304‑M1/91‑27 (MQ=255)
                                            gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                 <  1:3635872/91‑1 (MQ=34)
                                              aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACc                               <  1:3452210‑M2/91‑2 (MQ=255)
                                              aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACc                               >  1:1517003‑M2/1‑90 (MQ=255)
                                                ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcat                             <  2:4400708‑M2/91‑4 (MQ=255)
                                                  aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcattc                           <  1:1213788‑M2/91‑6 (MQ=255)
                                                   tGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcattcg                          >  2:3776800‑M2/1‑85 (MQ=255)
                                                   tGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTT‑‑‑GTCGAATGgtcggcttaatagctcacgctatgccgacattcgtct                       <  2:2909741‑M1/91‑38 (MQ=255)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  2:3336696/91‑1 (MQ=34)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  2:399220/91‑1 (MQ=33)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  2:616184/91‑1 (MQ=34)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  1:3718538/91‑1 (MQ=34)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  1:2470539/91‑1 (MQ=34)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  2:4499074/91‑1 (MQ=34)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                         <  1:537930/91‑1 (MQ=34)
                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTT‑‑‑GTCGAATGgtcggcttaatagctcacgctatgccgacattcgtctg                      <  1:978181‑M1/91‑39 (MQ=255)
                                                     ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                        >  2:257824‑M2/1‑90 (MQ=255)
                                                     ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                        >  1:295745‑M2/1‑90 (MQ=255)
                                                     ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                        >  2:203516‑M2/1‑90 (MQ=255)
                                                     ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                        >  1:865634‑M2/1‑90 (MQ=255)
                                                     ccGAGAAAATTTATTGATGTAGAGAAGAACCCTTGGCTAAACTTGCAGACGAATGTCGGCATAGCTTGAGCTATTAAGCCGACcattcgcc                        >  2:4912238‑M2/1‑83 (MQ=255)
                                                      cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAca                       >  2:1911740‑M2/1‑89 (MQ=255)
                                                      cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAca                       <  2:1527652‑M2/91‑3 (MQ=255)
                                                       gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAcaa                      <  1:5032876‑M2/91‑4 (MQ=255)
                                                       gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAcaa                      <  2:1177711‑M2/91‑4 (MQ=255)
                                                          aaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAcaagtt                   <  2:234431‑M2/91‑7 (MQ=255)
                                                          aaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAcaagtt                   >  2:2141699‑M2/1‑85 (MQ=255)
                                                           aaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAcaagttt                  <  2:5271697‑M2/91‑8 (MQ=255)
                                                                        ttGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcattcgtctgcaagtttagttaagggt     <  1:4228001‑M2/91‑28 (MQ=255)
                                                                           agaagaACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcattcgtctgcaagtttagttaagggttct  <  1:5752258‑M2/91‑31 (MQ=255)
                                                                                          |                                                                           
GAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGT  >  NC_012417/1885‑2050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.