| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 512969 = | NA (NA) | 16 (0.060) | 8/142 | NT | NA | intergenic (+1037/‑5726) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 512991 = | NA (NA) | intergenic (+1059/‑5704) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 291 total aligned reads displayed.
ATGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC > USA300TCH1516_ALE/512879‑513040 | aTGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAatat > 2:1007053/1‑91 (MQ=33) ttAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATAtttt < 2:5302460/91‑1 (MQ=33) ttAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATAtttt > 1:3415766/1‑91 (MQ=34) tAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTg < 2:3150523/91‑1 (MQ=34) aGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGa > 1:945332/1‑91 (MQ=33) aGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGa > 2:1927615/1‑91 (MQ=34) cggcggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAAc > 2:2362139/1‑91 (MQ=34) gcggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCg > 1:2231447/1‑91 (MQ=34) gACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCAt > 1:1179604/1‑91 (MQ=34) gACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCAt < 1:414298/91‑1 (MQ=34) cGGGTGAGTAAGACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg > 2:5814340/1‑91 (MQ=21) cGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg > 1:2053786/1‑91 (MQ=34) cGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg < 1:2844800/91‑1 (MQ=34) cGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg > 1:3968374/1‑91 (MQ=34) gggTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTGATACCGGATAATATTTTGAACCGCATGGt < 2:3261584/91‑1 (MQ=21) gggTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGt < 1:2746456/91‑1 (MQ=34) gggTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGt < 2:2580618/91‑1 (MQ=34) gggTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGt < 1:455926/91‑1 (MQ=34) ggTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGtt < 1:1324483/91‑1 (MQ=33) gTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTc < 2:2864455/91‑1 (MQ=34) tGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCa > 1:5507177/1‑91 (MQ=34) gTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCaaaa > 1:5017658/1‑91 (MQ=34) acacGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACTGGATAATATTTTGAACCGCATGGTTCAAAAGTg < 1:5813805/91‑1 (MQ=21) cGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaaa > 1:2563264/1‑91 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 1:5663417/91‑1 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 1:645971/91‑1 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 2:4938753/91‑1 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 2:4763604/91‑1 (MQ=33) tGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGa > 2:850018/1‑91 (MQ=34) gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg < 1:465170/91‑1 (MQ=34) gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg > 1:857035/1‑91 (MQ=34) aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg < 1:1531646/91‑1 (MQ=34) aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg > 1:2500507/1‑91 (MQ=34) aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg < 2:5598889/91‑1 (MQ=34) aTAACCTACCCATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTTAACCGCATGGTTCAAAAGTGAAAGACgg < 2:2724945/91‑1 (MQ=255) tAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGt > 1:3264232/1‑91 (MQ=34) aaCCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTc < 2:1325663/91‑1 (MQ=33) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTGAAAAGTGAAAGTCGGTCt > 1:4898017/1‑91 (MQ=255) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 2:1675925/1‑91 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 2:1030037/1‑91 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 1:5407295/1‑91 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt < 2:297247/91‑1 (MQ=34) cctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCtt < 1:2632993/91‑1 (MQ=34) ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg > 1:3162329/1‑91 (MQ=34) ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg > 2:2188690/1‑91 (MQ=34) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt < 2:4029729/91‑1 (MQ=33) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt < 1:3147742/91‑1 (MQ=34) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt < 1:2865221/91‑1 (MQ=34) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt < 1:1643333/91‑1 (MQ=34) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt < 2:1813144/91‑1 (MQ=33) cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGCAAGACGGACTTGCTg > 2:4519428/1‑91 (MQ=255) cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg < 1:1010807/91‑1 (MQ=34) cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg < 1:568945/91‑1 (MQ=34) cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg > 1:1994297/1‑91 (MQ=34) ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa < 2:1897703/91‑1 (MQ=34) ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa < 2:783106/91‑1 (MQ=34) aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt > 1:613549/1‑91 (MQ=34) gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta < 2:346193/91‑1 (MQ=33) gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta < 2:4990854/91‑1 (MQ=33) gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta > 1:1479430/1‑91 (MQ=34) aCTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtat > 1:4254673/1‑91 (MQ=34) cTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtata > 2:5724603/1‑91 (MQ=34) gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa < 2:3646528/91‑1 (MQ=34) gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa > 1:4313958/1‑91 (MQ=34) ggATAACTTCGGGAAACCGTAGCTAATACCGGATACTATTTTGAATCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt > 2:5659695/1‑91 (MQ=255) ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt > 1:578330/1‑91 (MQ=34) ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt > 1:4291699/1‑91 (MQ=34) gATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGCACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATg < 1:1149350/91‑1 (MQ=18) gATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATg > 1:4769125/1‑91 (MQ=34) aTAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATgg < 2:3207728/91‑1 (MQ=34) aTAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATgg > 2:5174338/1‑91 (MQ=34) tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa < 2:1144119/91‑1 (MQ=33) tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa < 1:3709651/91‑1 (MQ=33) tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa > 2:5118734/1‑91 (MQ=34) aaCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGAt > 1:3031896/1‑91 (MQ=34) aaCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGAt > 2:3045632/1‑91 (MQ=34) aCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATc < 1:1903549/91‑1 (MQ=34) ctgcGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATcc < 2:1236627/88‑1 (MQ=18) cTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATcc > 1:3080263/1‑91 (MQ=34) ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg > 2:5467456/1‑91 (MQ=34) ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg < 1:5179813/91‑1 (MQ=34) tCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCACATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgc < 1:70669/91‑1 (MQ=21) cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGTTCTTGCTGTCACTTATAGATGGATCagcg > 2:2610799/1‑91 (MQ=16) cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg > 1:3675880/1‑91 (MQ=34) cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg > 2:278046/1‑91 (MQ=33) gggAAACCGTAGCTAATACCGGATAATATTTTGAGCCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc < 2:4157478/91‑1 (MQ=18) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc < 2:1415008/91‑1 (MQ=33) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc < 2:2270446/91‑1 (MQ=33) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc < 1:1432015/91‑1 (MQ=33) gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg > 1:1857473/1‑91 (MQ=34) gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg < 1:1775255/91‑1 (MQ=34) aaaCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGc < 1:4069974/91‑1 (MQ=34) aaCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCa < 2:663992/91‑1 (MQ=34) aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt < 1:3270635/91‑1 (MQ=34) aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt > 2:3552956/1‑91 (MQ=34) aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAATGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt < 2:5753567/91‑1 (MQ=21) ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAGGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt < 2:3419223/91‑1 (MQ=18) ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTCCAAAAGTGAAAGACGGTCTTGATGTCACTTATAGATGGATCCGCGCTGCAtt > 2:4329324/1‑91 (MQ=255) cGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTa > 1:5323006/1‑91 (MQ=33) tAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGc > 2:3869197/1‑91 (MQ=31) | ATGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC > USA300TCH1516_ALE/512879‑513040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |