New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 512969 =NA (NA)16 (0.060) 8/142 NT NA intergenic (+1037/‑5726) recR/speA_2 Recombination protein RecR/Arginine decarboxylase
?USA300TCH1516_ALE 512991 = NA (NA)intergenic (+1059/‑5704) recR/speA_2 Recombination protein RecR/Arginine decarboxylase

Only 100 of 226 total aligned reads displayed.

AACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC  >  USA300TCH1516_ALE/512902‑513040
                                                                                         |                                                 
aaCACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGt                                                  <  1:1678973/91‑1 (MQ=34)
   acGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaa                                               >  2:645971/1‑91 (MQ=34)
   acGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaa                                               >  1:307740/1‑91 (MQ=34)
   acGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaa                                               >  1:184181/1‑91 (MQ=34)
     gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             >  1:988981/1‑91 (MQ=34)
     gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  1:5663433/91‑1 (MQ=34)
     gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  1:5381168/91‑1 (MQ=34)
      tGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGa                                            >  2:850018/1‑91 (MQ=34)
       ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           <  2:3099986/91‑1 (MQ=34)
       ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           >  1:455009/1‑91 (MQ=34)
       ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           <  1:5564768/91‑1 (MQ=34)
       ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           <  1:2910386/91‑1 (MQ=34)
        gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg                                          >  1:3128641/1‑91 (MQ=33)
        gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg                                          <  1:465170/91‑1 (MQ=34)
        gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGGTCAAAAGTGAAAGACg                                          >  2:3277668/1‑91 (MQ=18)
         aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           <  1:1480213/89‑1 (MQ=35)
         aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg                                         <  1:638657/91‑1 (MQ=33)
         aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg                                         >  1:2500507/1‑91 (MQ=34)
         aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg                                         <  2:777390/91‑1 (MQ=34)
         aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg                                         <  1:1531646/91‑1 (MQ=34)
         aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg                                         <  2:5119904/91‑1 (MQ=33)
         aTAACCTACCCATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTTAACCGCATGGTTCAAAAGTGAAAGACgg                                         <  2:2724945/91‑1 (MQ=255)
          tAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGt                                        >  1:3264498/1‑91 (MQ=34)
           aaCCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTc                                       <  1:4265952/91‑1 (MQ=34)
            acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  1:5407295/1‑91 (MQ=34)
            acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  2:1675925/1‑91 (MQ=34)
            acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  1:138478/1‑91 (MQ=34)
            acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  2:1028950/1‑91 (MQ=34)
            acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      <  1:4223912/91‑1 (MQ=34)
            acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      <  2:297247/91‑1 (MQ=34)
             cctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCtt                                     <  1:2632993/91‑1 (MQ=34)
              ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg                                    >  2:2774192/1‑91 (MQ=34)
              ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg                                    <  2:4027410/91‑1 (MQ=33)
              ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg                                    >  2:2188690/1‑91 (MQ=34)
               tacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGCACCGCATGGTTCAAAAGTGAAAGACGGTCTTGc                                   <  1:5815237/91‑1 (MQ=21)
               tacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGc                                   <  2:1420281/91‑1 (MQ=33)
                acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  2:800164/91‑1 (MQ=34)
                acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  1:2865221/91‑1 (MQ=34)
                acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  2:1813144/91‑1 (MQ=33)
                acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  2:5240758/91‑1 (MQ=34)
                 cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 <  1:1010807/91‑1 (MQ=34)
                 cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  1:1994297/1‑91 (MQ=34)
                 cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  1:5753567/1‑91 (MQ=34)
                 cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  2:5628983/1‑91 (MQ=34)
                 cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  2:5494982/1‑91 (MQ=34)
                  ctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGt                                <  1:71016/91‑1 (MQ=34)
                  ctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGt                                <  2:2818798/91‑1 (MQ=34)
                   tataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTc                               <  2:4048548/91‑1 (MQ=33)
                      aaGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACt                            <  2:2563600/91‑1 (MQ=34)
                       aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt                           >  2:2321618/1‑91 (MQ=34)
                       aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt                           >  1:1627958/1‑91 (MQ=34)
                       aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt                           >  2:1307043/1‑91 (MQ=34)
                        gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta                          <  2:4990854/91‑1 (MQ=33)
                        gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta                          <  2:346193/91‑1 (MQ=33)
                        gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta                          >  2:1862174/1‑91 (MQ=34)
                          cTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtata                        >  2:5724603/1‑91 (MQ=34)
                            gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa                      >  1:4953176/1‑91 (MQ=34)
                             ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     <  1:2579736/91‑1 (MQ=34)
                             ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     >  1:4293363/1‑91 (MQ=34)
                              gATATCTTCGGGAACCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAACGACGGTCTTGCTGTCACTTATAGATg                    >  2:3652298/1‑91 (MQ=255)
                              gATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATg                    >  2:4941978/1‑91 (MQ=34)
                              gATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATg                    >  1:4769125/1‑91 (MQ=34)
                              gATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAACTGAAAGACGGTCTTGCTGTCACTTATAGATg                    >  2:1922456/1‑91 (MQ=21)
                               aTAACTTCGGGAAACGGTAGCTCATATCGGATAATATTTTGAACCTCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATgg                   <  2:5755719/91‑1 (MQ=11)
                               aTAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATgg                   <  2:3154129/91‑1 (MQ=34)
                                tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa                  <  2:1144119/91‑1 (MQ=33)
                                tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa                  <  1:3709651/91‑1 (MQ=33)
                                 aaCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGAt                 <  1:5040457/91‑1 (MQ=34)
                                 aaCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGAt                 >  2:3045632/1‑91 (MQ=34)
                                  aCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATc                <  1:4107216/91‑1 (MQ=34)
                                  aCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATc                <  1:1902746/91‑1 (MQ=33)
                                   cTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATcc               <  1:522587/91‑1 (MQ=33)
                                    ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg              >  2:5467456/1‑91 (MQ=34)
                                    ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg              <  2:4818376/91‑1 (MQ=34)
                                     tCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgc             <  1:1155419/91‑1 (MQ=34)
                                     tCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgc             <  1:5806616/91‑1 (MQ=34)
                                     tCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgc             <  1:3157716/91‑1 (MQ=34)
                                      cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGTTCTTGCTGTCACTTATAGATGGATCagcg            >  2:2610799/1‑91 (MQ=16)
                                      cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg            >  1:3675880/1‑91 (MQ=34)
                                       gggAAACCGTGGCTAATACCGGATAATATTTTGAACCTCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  2:4663995/91‑1 (MQ=16)
                                       gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  2:2270446/91‑1 (MQ=33)
                                       gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  1:1432015/91‑1 (MQ=33)
                                       gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  2:5073475/91‑1 (MQ=34)
                                       gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  2:1336304/91‑1 (MQ=34)
                                         gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg         >  1:1857473/1‑91 (MQ=34)
                                          aaaCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGc        <  1:4069974/91‑1 (MQ=34)
                                            aCCGTCGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAATGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      >  2:5745285/1‑91 (MQ=12)
                                            aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      <  1:3270635/91‑1 (MQ=34)
                                            aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      >  1:2853860/1‑91 (MQ=34)
                                            aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      >  2:3552956/1‑91 (MQ=34)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     <  2:4246616/91‑1 (MQ=33)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:3185976/1‑91 (MQ=34)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     <  1:2774192/91‑1 (MQ=34)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:4836458/1‑91 (MQ=34)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:2533320/1‑91 (MQ=34)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  2:1046572/1‑91 (MQ=33)
                                             ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATCGATCCGCGCTGCAtt     >  2:4508949/1‑91 (MQ=21)
                                                tAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGc  >  2:3869197/1‑91 (MQ=31)
                                                tAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGc  >  2:344057/1‑91 (MQ=31)
                                                tAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGc  <  1:674178/91‑1 (MQ=31)
                                                                                         |                                                 
AACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC  >  USA300TCH1516_ALE/512902‑513040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.