| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1205288 | 207 (0.690) | 27 (0.100) | 10/150 | NT | 12.2% | intergenic (‑169/‑400) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | = 1804927 | NA (NA) | intergenic (‑215/+426) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase | |||||
Only 100 of 300 total aligned reads displayed.
CGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGG > USA300TCH1516_ALE/1205198‑1205378 | cGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCC < 1:4536408‑M1/91‑1 (MQ=255) aTTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAg > 2:2037241/1‑91 (MQ=35) aTTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAg < 1:5484154/91‑1 (MQ=35) ttCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGt > 2:5304467/1‑91 (MQ=34) ttCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGt > 2:1704160/1‑91 (MQ=34) cATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCg > 2:2463241/1‑91 (MQ=32) cATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCg > 1:5218675/1‑91 (MQ=32) aTGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa > 1:417305/1‑91 (MQ=31) tATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCg < 1:4495867/91‑1 (MQ=32) tATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCg > 1:5554570/1‑91 (MQ=32) tattttttATATTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGa > 2:3810519/3‑91 (MQ=9) ttttttAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtc < 2:2901598‑M1/91‑16 (MQ=255) tttttAAATTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGc > 2:3855819/1‑91 (MQ=18) tttttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCagtctcagcctcggtc < 2:438688‑M1/91‑17 (MQ=255) tttcaaagtatTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtctt < 2:550213‑M1/87‑18 (MQ=255) tttcaaagtatTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtctt < 1:411788‑M1/87‑18 (MQ=255) tttaaaagtatGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtctt < 1:582790‑M1/87‑18 (MQ=255) tttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTg < 2:2258834/91‑1 (MQ=33) ttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTga > 2:2386276/1‑91 (MQ=32) tAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag > 2:4521296/1‑91 (MQ=31) aaGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtcttcgact < 1:467931‑M1/91‑23 (MQ=255) aGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtcttcgactg < 1:5611696‑M1/91‑24 (MQ=255) aGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtcttcgactg < 1:640537‑M1/91‑24 (MQ=255) aGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtcttcgac < 1:11657‑M1/89‑22 (MQ=255) atgtaaaAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCgtctcagcctcggtcttcgactggca < 1:1248319‑M1/88‑27 (MQ=255) aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg > 2:2514800/1‑91 (MQ=31) aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg < 1:510450/91‑1 (MQ=31) aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg > 1:1984911/1‑91 (MQ=32) aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg < 2:2959172/91‑1 (MQ=32) aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg < 1:2443755/91‑1 (MQ=32) aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg > 1:1484928/1‑91 (MQ=33) aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg < 1:1647854/91‑1 (MQ=33) aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg > 2:693511/1‑91 (MQ=33) aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa > 1:2044248/1‑91 (MQ=34) aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa > 2:3772442/1‑91 (MQ=34) aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa > 1:1794008/1‑91 (MQ=34) tACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGTAGTGCCAGTCGAAAACCGAGGCTGAGACGGCACCCTAGGAAGGGAcc < 2:3148729/91‑1 (MQ=255) cATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCca < 2:4295672/91‑1 (MQ=39) cATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTCAGACGGCACCCTAGGAAGGGACCca > 2:5437855/1‑91 (MQ=255) cATGTTAAGACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGACgtctcagcctcggtcttcgactggcactgctccctcaggagtc < 2:5695994‑M1/91‑44 (MQ=255) aTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcat > 1:4335791/1‑91 (MQ=40) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca < 2:3642515/91‑1 (MQ=255) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca > 1:3387803/1‑91 (MQ=255) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca < 1:2597681/91‑1 (MQ=255) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca < 1:3922262/91‑1 (MQ=255) ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatcat < 1:2728788/91‑1 (MQ=255) tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc < 2:190077/91‑1 (MQ=255) tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc < 2:5085219/91‑1 (MQ=255) tACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaa > 1:756045/1‑91 (MQ=255) cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa > 1:3173423/1‑91 (MQ=255) cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa > 2:1155465/1‑91 (MQ=255) gtagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAt > 2:3254051/1‑91 (MQ=255) gtagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAt < 1:1285737/91‑1 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt > 1:802643/1‑91 (MQ=255) aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt > 1:2287877/1‑91 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat < 2:3460797/91‑1 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat < 2:3576862/91‑1 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat > 2:1740171/1‑91 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtata > 1:4998004/1‑91 (MQ=255) ggCGATACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg > 2:5735474/1‑91 (MQ=255) ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg < 2:2689231/91‑1 (MQ=255) ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg < 2:1607969/91‑1 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAtt > 1:1586934/1‑91 (MQ=255) cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa < 2:4163531/91‑1 (MQ=255) cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa > 2:4049404/1‑91 (MQ=255) ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACa < 2:873716/91‑1 (MQ=255) ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACa < 2:2725722/91‑1 (MQ=255) cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAg > 1:3010880/1‑91 (MQ=255) cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAg > 1:945937/1‑91 (MQ=255) cTGAGGGAGCAGTGCCAGTCGAAGACCGAGACTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAAAATTTTAcgg > 2:4656071/1‑89 (MQ=255) gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTa > 1:442312/1‑91 (MQ=255) gggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAt < 1:709854/91‑1 (MQ=255) ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtg > 1:2571351/1‑91 (MQ=255) gAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgt < 2:5538378/91‑1 (MQ=255) aGCAGTGCCAGTCGAAGCCCGAGGCTGAGACGGCACCCTAGGAAGGGATCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg > 1:5686556/1‑91 (MQ=255) aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg < 1:2386276/91‑1 (MQ=255) aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg < 2:4919760/91‑1 (MQ=255) gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc < 1:2832962/91‑1 (MQ=255) gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACACTAGGAAGGAACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc > 2:5650665/1‑91 (MQ=255) cAGTGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttta > 2:5015216‑M1/1‑7 (MQ=255) aGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCa > 1:5856328/1‑91 (MQ=255) gTGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaca > 2:112303‑M1/1‑5 (MQ=255) gTGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaca < 2:4851828‑M1/91‑87 (MQ=255) gTGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaca < 2:1355534‑M1/91‑87 (MQ=255) gTGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaca < 1:3188521‑M1/91‑87 (MQ=255) gTGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaca < 2:1284640‑M1/91‑87 (MQ=255) tGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacat < 1:215088‑M1/91‑88 (MQ=255) tGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacat > 1:3294752‑M1/1‑4 (MQ=255) tGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacat < 2:3966074‑M1/91‑88 (MQ=255) tGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacat < 1:2415155‑M1/91‑88 (MQ=255) tGCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacat < 2:3303549‑M1/91‑88 (MQ=255) tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGa < 2:2637507/91‑1 (MQ=255) gCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacata > 2:5202392‑M1/1‑3 (MQ=255) gCCgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaa > 1:3551450‑M1/1‑3 (MQ=255) ccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatac < 1:2612106‑M1/91‑90 (MQ=255) ccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatac < 1:5310167‑M1/91‑90 (MQ=255) ccAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATg > 2:149606/1‑91 (MQ=255) cgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatact > 2:5372219‑M1/1‑1 (MQ=255) cgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatact < 1:1919608‑M1/91‑91 (MQ=255) cgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatact > 1:1037877‑M1/1‑1 (MQ=255) | CGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGG > USA300TCH1516_ALE/1205198‑1205378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |