New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1205323NA (NA)31 (0.110)
+AGCGAA		 7/148 NT 18.8% intergenic (‑204/‑365) USA300HOU_RS15290/lspA hypothetical protein/Lipoprotein signal peptidase
?USA300TCH1516_ALE 2317633 = 145 (0.490)intergenic (+286/‑170) iucC_3/USA300TCH1516_02193 Aerobactin synthase/hypothetical protein

Only 100 of 309 total aligned reads displayed.

AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATA  >  USA300TCH1516_ALE/1205234‑1205413
                                                                                         |                                                                                          
aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg                                                                                           >  2:2514800/1‑91 (MQ=31)
aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg                                                                                           <  1:510450/91‑1 (MQ=31)
aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg                                                                                           >  2:4443281/1‑91 (MQ=31)
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          >  1:1984911/1‑91 (MQ=32)
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          <  2:2959156/91‑1 (MQ=32)
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          >  1:5454773/1‑91 (MQ=32)
  aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg                                                                                         >  1:1484928/1‑91 (MQ=33)
  aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg                                                                                         >  2:2436551/1‑91 (MQ=33)
  aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg                                                                                         >  1:626578/1‑91 (MQ=33)
   aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa                                                                                        <  1:3485627/91‑1 (MQ=34)
   aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa                                                                                        >  2:3772442/1‑91 (MQ=34)
     tACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAcc                                                                                      >  2:2390841/1‑91 (MQ=37)
          gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca                                                                                 >  1:3387803/1‑91 (MQ=255)
           ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatcat                                                                                <  1:5682490/91‑1 (MQ=255)
               tACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaa                                                                            >  1:756045/1‑91 (MQ=255)
                 cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa                                                                          >  2:1155465/1‑91 (MQ=255)
                 cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa                                                                          >  1:3173423/1‑91 (MQ=255)
                      taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTa                                                                     <  1:4301798/91‑1 (MQ=255)
                      taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTa                                                                     <  2:3944641/91‑1 (MQ=255)
                       aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt                                                                    >  1:5604337/1‑91 (MQ=255)
                         tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAttt                                                                  >  1:2848569/1‑91 (MQ=255)
                         tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaa                                                                  <  1:4088762/91‑3 (MQ=255)
                         tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaa                                                                  <  2:2269323/91‑3 (MQ=255)
                         tAATGGCGAGACTCCTGAGGGAGCAGTGCCAATCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaa                                                                  <  2:2754087/91‑3 (MQ=255)
                          aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaaa                                                                 <  2:4895143/91‑4 (MQ=255)
                          aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaaa                                                                 <  1:253376/91‑4 (MQ=255)
                          aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTta                                                                 >  1:2114881/1‑91 (MQ=255)
                          aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTta                                                                 >  2:5471536/1‑91 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                <  1:3197587/91‑1 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                <  1:3816248/91‑1 (MQ=255)
                            tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtata                                                               <  2:3594767/91‑1 (MQ=255)
                            tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAACTCTATTtata                                                               >  2:4650775/1‑91 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              <  2:1607969/91‑1 (MQ=255)
                                 agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAtt                                                          >  1:1586934/1‑91 (MQ=255)
                                  gaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAttt                                                         >  2:502887/1‑91 (MQ=255)
                                     tCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTAc                                                      <  2:309160/91‑1 (MQ=255)
                                     tCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTATATTTATAGAATTTTAc                                                      <  1:4441115/91‑1 (MQ=255)
                                      ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACa                                                     >  1:2577551/1‑91 (MQ=255)
                                      ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACa                                                     <  2:1495988/91‑1 (MQ=255)
                                       cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAg                                                    >  1:3010880/1‑91 (MQ=255)
                                       cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAg                                                    >  1:945937/1‑91 (MQ=255)
                                       cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAg                                                    >  2:5723040/1‑91 (MQ=255)
                                        tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGt                                                   <  1:5045296/91‑1 (MQ=255)
                                        tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGt                                                   >  2:781874/1‑91 (MQ=255)
                                         gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACTCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTa                                                  >  2:5414690/1‑91 (MQ=255)
                                           gggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAt                                                <  1:709854/91‑1 (MQ=255)
                                             gAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgt                                              <  2:5538378/91‑1 (MQ=255)
                                              aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                             <  1:2386276/91‑1 (MQ=255)
                                              aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                             <  2:4077826/91‑1 (MQ=255)
                                              aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                             >  1:2604133/1‑91 (MQ=255)
                                               gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc                                            <  2:2075518/91‑1 (MQ=255)
                                               gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc                                            <  2:4043276/91‑1 (MQ=255)
                                               gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACACTAGGAAGGAACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc                                            >  2:5650665/1‑91 (MQ=255)
                                                 aGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCa                                          >  1:5856328/1‑91 (MQ=255)
                                                  gTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAg                                         >  1:1271647/1‑91 (MQ=255)
                                                   tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGa                                        <  2:2712473/91‑1 (MQ=255)
                                                   tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGa                                        <  2:2637507/91‑1 (MQ=255)
                                                     ccAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATg                                      >  1:1712793/1‑91 (MQ=255)
                                                        gTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGc                                   <  1:2436551/91‑1 (MQ=255)
                                                         tCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTTCCAGATGGGCa                                  >  2:1548945/1‑91 (MQ=255)
                                                         tCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCa                                  <  1:1950339/91‑1 (MQ=255)
                                                          cGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCAt                                 <  1:887957/91‑1 (MQ=255)
                                                          cGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCAt                                 >  1:1397994/1‑91 (MQ=255)
                                                           gAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATa                                <  1:5353631/91‑1 (MQ=255)
                                                            aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAg                               >  1:2748121/1‑91 (MQ=255)
                                                             aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                              <  1:3243567/91‑1 (MQ=255)
                                                             aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                              >  2:347384/1‑91 (MQ=255)
                                                             aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                              <  1:2347200/91‑1 (MQ=255)
                                                             aGACCGAGGATGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                              <  1:2000307/91‑1 (MQ=255)
                                                              gACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg                             <  2:3354432/91‑1 (MQ=40)
                                                               aCCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGa                            >  2:600871/1‑91 (MQ=40)
                                                               aCCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCAGCAAAAATTCTACTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGa                            <  1:4880524/91‑1 (MQ=255)
                                                                ccGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGaa                           >  2:4251319/1‑91 (MQ=38)
                                                                ccGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGaa                           <  2:1672009/91‑1 (MQ=39)
                                                                   aGGCTGAGACGGTACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGcc                        <  2:3790911/91‑1 (MQ=25)
                                                                    ggCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCa                       >  1:1002636/1‑91 (MQ=34)
                                                                      cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                     <  1:1830325/91‑1 (MQ=34)
                                                                      cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                     <  1:217996/91‑1 (MQ=33)
                                                                      cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                     <  1:5188714/91‑1 (MQ=33)
                                                                      cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACACTAATGTGCCAGATGGGCATAGCGAAGCCAtt                     <  1:5723040/91‑1 (MQ=21)
                                                                          gaCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                 >  2:2868722/1‑91 (MQ=33)
                                                                          gaCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                 >  1:4739208/1‑91 (MQ=34)
                                                                           aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                >  1:3839373/1‑91 (MQ=34)
                                                                           aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                <  1:1793243/91‑1 (MQ=34)
                                                                            cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATAc               >  2:3627600/1‑91 (MQ=34)
                                                                            cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATAc               >  2:2471716/1‑91 (MQ=34)
                                                                             ggCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACg              <  1:3548331/91‑1 (MQ=34)
                                                                             ggCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACg              <  2:4700818/91‑1 (MQ=33)
                                                                              gCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGa             >  1:12051/1‑91 (MQ=34)
                                                                              gCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGa             <  1:4230864/91‑1 (MQ=34)
                                                                               cACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATActtc            <  2:1118548/91‑4 (MQ=21)
                                                                                aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAg           >  2:1742620/1‑91 (MQ=34)
                                                                                  ccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTa         >  1:2667590/1‑91 (MQ=33)
                                                                                  ccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTa         >  2:3247126/1‑91 (MQ=34)
                                                                                    tAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTATAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt       >  1:4577288/1‑91 (MQ=21)
                                                                                      ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt     <  2:5218675/91‑1 (MQ=34)
                                                                                      ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt     <  2:1831682/91‑1 (MQ=33)
                                                                                      ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt     <  1:439477/91‑1 (MQ=33)
                                                                                       gAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGta    >  2:1764174/1‑91 (MQ=34)
                                                                                       gAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGta    <  2:5154123/91‑1 (MQ=33)
                                                                                         |                                                                                          
AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATA  >  USA300TCH1516_ALE/1205234‑1205413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.