BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	232 (0.780)	11 (0.040)	9/132	NT	6.2%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1456990 =	141 (0.570)	11 (0.040)	9/132	NT	6.2%	intergenic (‑104/‑140)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein

Only 100 of 325 total aligned reads displayed.

CAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGG  >  USA300TCH1516_ALE/1456858‑1457038

 tctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaa                                                                                            >  2:528501‑M1/90‑91 (MQ=255)

 tctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaa                                                                                            <  2:4130759‑M1/2‑1 (MQ=255)

  ctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaaa                                                                                           <  1:729361‑M1/3‑1 (MQ=255)

  aCGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATGTGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaa                                                                                           <  1:5772079/91‑1 (MQ=255)

   tagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaaaa                                                                                          >  2:3914839‑M1/88‑91 (MQ=255)

   cGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCGGTAAAAGAGAATATACGTTATAACAACGGTTTATaaaa                                                                                          >  2:5698107/1‑91 (MQ=255)

    gTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAg                                                                                         >  2:869365/1‑91 (MQ=255)

     tttCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGc                                                                                        >  2:3423652/1‑91 (MQ=255)

     gcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGc                                                                                        <  2:976845‑M1/6‑1 (MQ=255)

       tCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAg                                                                                      >  1:4240731/1‑91 (MQ=255)

       acgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAg                                                                                      >  2:3170785‑M1/84‑91 (MQ=255)

        cgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGt                                                                                     >  2:2851977‑M1/83‑91 (MQ=255)

        cgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGt                                                                                     >  2:4735938‑M1/83‑91 (MQ=255)

         gTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTa                                                                                    <  2:3553845/91‑1 (MQ=255)

         gTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTa                                                                                    >  1:2641041/1‑91 (MQ=255)

         gTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTa                                                                                    <  1:3486996/91‑1 (MQ=255)

          ttCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTaa                                                                                   <  2:4087368/91‑1 (MQ=255)

          ttCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTaa                                                                                   >  2:2081418/1‑91 (MQ=255)

          tagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTaa                                                                                   >  1:3639418‑M1/81‑91 (MQ=255)

            cTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAc                                                                                 >  2:1267114/1‑91 (MQ=255)

             agatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAAcc                                                                                >  2:345604‑M1/78‑91 (MQ=255)

              tgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAccc                                                                               <  2:487139/91‑1 (MQ=255)

              tgttgGATTGGTCATTTTCAAATATTCACCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAccc                                                                               >  1:28569/1‑91 (MQ=255)

               gttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCt                                                                              >  2:1842532/1‑91 (MQ=255)

                ttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCtt                                                                             <  2:4687896/91‑1 (MQ=255)

                   gATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACg                                                                          <  1:1757461/91‑1 (MQ=255)

                     ttGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGac                                                                        <  2:2620725/91‑1 (MQ=255)

                      tGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGaca                                                                       >  1:1544527/1‑91 (MQ=255)

                         tCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACtt                                                                    >  2:5356443/1‑91 (MQ=255)

                         tCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACtt                                                                    >  2:4359080/1‑91 (MQ=255)

                          cATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACttt                                                                   >  1:2703219/1‑91 (MQ=255)

                          cATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACttt                                                                   <  1:5274096/91‑1 (MQ=255)

                          cATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACttt                                                                   >  2:3343822/1‑91 (MQ=255)

                           aTTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTa                                                                  <  1:840302/91‑1 (MQ=255)

                           aTTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTa                                                                  >  1:5007901/1‑91 (MQ=255)

                            ttttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAg                                                                 >  1:5086897/1‑91 (MQ=255)

                             tttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAgg                                                                <  1:4991775/91‑1 (MQ=255)

                             tttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAgg                                                                <  2:4212969/91‑1 (MQ=255)

                             acaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAACCCTTACGACACTTTAgg                                                                >  1:2395629‑M1/62‑91 (MQ=255)

                               tCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGtt                                                              <  2:1105822/91‑1 (MQ=255)

                                 aaaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTa                                                            >  1:4287201/1‑91 (MQ=255)

                                 aaaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTa                                                            >  2:632638/1‑91 (MQ=255)

                                  aaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTAc                                                           >  1:235604/1‑91 (MQ=255)

                                    tatTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTg                                                         >  2:3119168/1‑91 (MQ=255)

                                    tatTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTg                                                         >  2:1316532/1‑91 (MQ=255)

                                       tCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                      <  1:5426954/91‑1 (MQ=255)

                                       tCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                      <  1:3052717/91‑1 (MQ=255)

                                       tCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                      <  2:2047219/91‑1 (MQ=255)

                                        ccccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCttt                                                     <  1:4387902/91‑1 (MQ=255)

                                        ccccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCttt                                                     >  1:3805289/1‑91 (MQ=255)

                                        ccccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCttt                                                     <  2:2470236/91‑1 (MQ=255)

                                        ccccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCttt                                                     >  2:729226/1‑91 (MQ=255)

                                         cccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtttt                                                    >  1:3402833/1‑91 (MQ=255)

                                          ccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTg                                                   <  1:1291962/91‑1 (MQ=255)

                                            ttttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtt                                                 <  2:5558618/91‑1 (MQ=255)

                                             tttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGttt                                                >  2:92526/1‑91 (MQ=255)

                                              ttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                               <  2:2177607/91‑1 (MQ=255)

                                               tataTGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGttttt                                              >  1:3538261/1‑91 (MQ=255)

                                                  atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt                                           >  2:1811850/1‑91 (MQ=255)

                                                  atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt                                           >  1:1398927/1‑91 (MQ=255)

                                                  atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt                                           <  1:403467/91‑1 (MQ=255)

                                                   tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                          <  2:1517953/91‑1 (MQ=255)

                                                   tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                          <  1:3147216/91‑1 (MQ=255)

                                                   tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                          >  2:3018559/1‑91 (MQ=255)

                                                   tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTATTTGTa                                          >  1:4897756/1‑91 (MQ=255)

                                                    gCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaa                                         >  1:3343105/1‑91 (MQ=255)

                                                     cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                        >  1:5138254/1‑91 (MQ=255)

                                                     cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                        >  1:4445160/1‑91 (MQ=255)

                                                      tcGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaaa                                       <  2:5004125/90‑1 (MQ=255)

                                                       cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaaaa                                      <  2:3129774/91‑1 (MQ=255)

                                                        gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                     <  2:3641692/91‑1 (MQ=255)

                                                        gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                     <  1:3900018/91‑1 (MQ=255)

                                                           aaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaa                                  >  1:5589533/1‑91 (MQ=255)

                                                           aaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaa                                  <  2:779268/91‑1 (MQ=255)

                                                            aaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaaa                                 <  1:4522275/91‑1 (MQ=255)

                                                             aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc                                >  1:5483179/1‑91 (MQ=255)

                                                               aCAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa                              <  2:563162/91‑1 (MQ=255)

                                                                  atatACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATAc                           <  1:623803/91‑1 (MQ=255)

                                                                  atatACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATAc                           <  2:2650131/91‑1 (MQ=255)

                                                                    ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                         <  1:1949167/91‑1 (MQ=255)

                                                                     taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                        <  2:4830826/91‑1 (MQ=255)

                                                                      aCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTa                       >  2:165845/1‑91 (MQ=255)

                                                                       cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTTGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcata                      <  2:5678988/91‑4 (MQ=255)

                                                                       cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt                      >  2:474699/1‑91 (MQ=255)

                                                                         ttATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑Gc                   <  1:2051774/91‑1 (MQ=255)

                                                                            taACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTa                >  2:5104990/1‑91 (MQ=255)

                                                                            taACAACGTTTTATAAAAGCAGTAAACCCCTACGACACTTTAGGTTTACTGCTTTTGTTTTTTTTAATATGTTAACCATACGCTAT‑GCGTa                >  2:5157871/1‑91 (MQ=255)

                                                                               caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAGAACCATACGCATA‑GCGTATgg             <  1:4729703/91‑1 (MQ=255)

                                                                                aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGt            <  1:4125135/91‑1 (MQ=255)

                                                                                 acGTTTTATAAAAGCAGTAAACCCTTACGACGCTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt           >  1:5723630/1‑91 (MQ=255)

                                                                                 acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GTGTATGGtt           >  2:1939153/1‑91 (MQ=255)

                                                                                 acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGC‑ATAGCGTATGGtt           <  2:4484958/91‑1 (MQ=39)

                                                                                  cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTc          >  1:120634/1‑91 (MQ=255)

                                                                                   gTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCa         >  1:2521750/1‑91 (MQ=255)

                                                                                    ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAg        <  1:28257/91‑1 (MQ=255)

                                                                                      ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaa      >  1:1005700/1‑91 (MQ=255)

                                                                                       tataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaa     <  2:3999223/91‑1 (MQ=255)

                                                                                        ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa    >  1:167708/1‑91 (MQ=255)

                                                                                         taAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAg   >  1:1865216/1‑91 (MQ=255)

                                                                                          AAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAgg  >  1:1257089‑M1/1‑91 (MQ=255)

CAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGG  >  USA300TCH1516_ALE/1456858‑1457038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.