BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	232 (0.780)	11 (0.040)	9/132	NT	6.2%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1456990 =	141 (0.570)	11 (0.040)	9/132	NT	6.2%	intergenic (‑104/‑140)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein

Only 100 of 258 total aligned reads displayed.

CCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAAT  >  USA300TCH1516_ALE/1456900‑1457080

 cTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGt                                                                                            >  1:3999223/1‑91 (MQ=255)

  ttttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtt                                                                                           >  2:1664309/1‑91 (MQ=255)

   tttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGttt                                                                                          >  2:92526/1‑91 (MQ=255)

    tctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                                                                         >  1:1859708‑M1/45‑91 (MQ=255)

     tataTGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGttttt                                                                                        >  1:3538261/1‑91 (MQ=255)

        atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt                                                                                     >  1:1398927/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATATGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTATGACACTTTAGGTTTACTGCTTTGGTTTTTTGTa                                                                                    >  1:5352612/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                    <  1:3147216/91‑1 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                    >  2:4085723/1‑91 (MQ=255)

         tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                    >  2:3018559/1‑91 (MQ=255)

          gCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaa                                                                                   >  1:3343105/1‑91 (MQ=255)

          gCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaa                                                                                   <  2:3217943/91‑1 (MQ=255)

           cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                                                                  >  2:4847102/1‑91 (MQ=255)

           cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                                                                  >  1:4445160/1‑91 (MQ=255)

              gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                                                               <  2:439437/91‑1 (MQ=255)

                    gACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAcc                                                                         <  1:3756927/91‑1 (MQ=255)

                    gACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTAATGCTTTTGTTTTTTGTAAAAAGAAAAcc                                                                         >  2:5275322/1‑91 (MQ=255)

                     aCAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa                                                                        >  2:2672932/1‑91 (MQ=255)

                      cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                       >  2:1110900/1‑91 (MQ=255)

                       aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa                                                                      >  1:2373660/1‑91 (MQ=255)

                        atatACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATAc                                                                     <  2:2650131/91‑1 (MQ=255)

                         tataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg                                                                    <  2:2279047/91‑1 (MQ=255)

                          ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                                   <  1:1949167/91‑1 (MQ=255)

                           taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                                                                  <  1:276835/91‑1 (MQ=255)

                            aCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcat                                                                 <  2:411143/91‑3 (MQ=255)

                             cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt                                                                >  1:2464259/1‑91 (MQ=255)

                              gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                               <  2:3146402/91‑5 (MQ=255)

                              gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑g                                                              <  2:883459/91‑1 (MQ=255)

                               ttATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑Gc                                                             <  1:2051774/91‑1 (MQ=255)

                                tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCg                                                            <  1:3012507/91‑1 (MQ=255)

                                tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCg                                                            <  1:3423652/91‑1 (MQ=255)

                                  taACAACGTTTTATAAAAGCAGTAAACCCCTACGACACTTTAGGTTTACTGCTTTTGTTTTTTTTAATATGTTAACCATACGCTAT‑GCGTa                                                          >  2:5157871/1‑91 (MQ=255)

                                    acaacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATg                                                        >  1:4807604/1‑91 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAGAACCATACGCATA‑GCGTATgg                                                       <  1:4729703/91‑1 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg                                                       <  2:3964887/91‑1 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGC‑ATAGCGTATgg                                                       <  2:1271965/91‑1 (MQ=255)

                                     caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTGTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg                                                       <  1:5792479/91‑1 (MQ=255)

                                      aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGt                                                      <  1:4125135/91‑1 (MQ=255)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACGCTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt                                                     >  1:5723630/1‑91 (MQ=255)

                                       acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGATTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt                                                     >  2:1967830/1‑91 (MQ=255)

                                        cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGATAACCATACGCTAT‑GCGTATGGTTc                                                    >  2:4232535/1‑91 (MQ=255)

                                        cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTc                                                    <  1:2643839/91‑1 (MQ=255)

                                          tgttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAg                                                  <  2:4790827/89‑1 (MQ=255)

                                            ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaa                                                >  1:285132/1‑91 (MQ=255)

                                            ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaa                                                >  1:1005700/1‑91 (MQ=255)

                                            ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaa                                                >  1:5172816/1‑91 (MQ=255)

                                              ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa                                              <  2:4675775/91‑1 (MQ=255)

                                              ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa                                              >  1:5001919/1‑91 (MQ=255)

                                              ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa                                              >  1:167708/1‑91 (MQ=255)

                                               taAAAGCGGTAAACCCCTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCACACGCTAT‑GCGTATGGTTCAGAAAAg                                             <  2:5589533/91‑1 (MQ=37)

                                                AAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAgg                                            >  2:4193297‑M1/1‑91 (MQ=255)

                                                AAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAgg                                            >  1:1257089‑M1/1‑91 (MQ=255)

                                                 aaagcagtaaacctaaagtgtcgtaagggtttactgcttttGTTACTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGt                                           >  2:5680494‑M2/42‑91 (MQ=255)

                                                  AAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGtt                                          >  2:1473858‑M1/1‑91 (MQ=255)

                                                   AGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTc                                         <  1:1411182‑M1/91‑1 (MQ=255)

                                                   AGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTc                                         <  1:4702‑M1/91‑1 (MQ=255)

                                                   AGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTc                                         >  1:4269394‑M1/1‑91 (MQ=255)

                                                   AGCAGTAAACCCTTACGACACTTTAGGTTCACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACCCTAT‑GCGTATCGTTCAGAataggccc                                         <  1:4905261‑M1/91‑4 (MQ=255)

                                                    GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt                                        >  1:2189173‑M1/1‑91 (MQ=255)

                                                     CAGTAAACCCTTACGACACTTTCGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTa                                       <  2:4454412‑M1/91‑1 (MQ=255)

                                                     CAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTa                                       >  1:610252‑M1/1‑91 (MQ=255)

                                                     CAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTa                                       >  1:556203‑M1/1‑91 (MQ=255)

                                                       GTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTAcc                                     <  2:617706‑M1/91‑1 (MQ=255)

                                                          AACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCAtt                                  >  1:4562717‑M1/1‑91 (MQ=255)

                                                           ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAATAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                                 >  1:4414678‑M1/1‑91 (MQ=255)

                                                           ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg                                 <  1:4301980‑M1/91‑1 (MQ=255)

                                                            CCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGt                                >  1:5604517‑M1/1‑91 (MQ=255)

                                                            CCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGt                                >  1:869365‑M1/1‑91 (MQ=255)

                                                             CCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTTTTTTTATAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTc                               <  2:1316278‑M1/91‑1 (MQ=255)

                                                              taaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTca                              >  1:501855‑M2/29‑91 (MQ=255)

                                                              cTTACGTCATTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTca                              <  2:1742863/91‑1 (MQ=255)

                                                               ttACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                             <  2:737193/91‑1 (MQ=255)

                                                               ttACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                             <  1:648118/91‑1 (MQ=255)

                                                                 aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGt                                >  1:4490936/1‑86 (MQ=255)

                                                                 aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGt                                <  2:4490936/86‑1 (MQ=255)

                                                                 aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                           >  2:5096188/1‑91 (MQ=255)

                                                                     cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa                       >  1:111953/1‑91 (MQ=255)

                                                                      acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                      >  2:2997454/1‑91 (MQ=255)

                                                                       cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGGTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATg                     <  2:5650387/91‑1 (MQ=255)

                                                                        tttAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                                                                  <  2:3649890/46‑1 (MQ=255)

                                                                        tttAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                                                                  >  1:3649890/1‑46 (MQ=255)

                                                                         ttAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCa                   <  2:4986946/91‑1 (MQ=255)

                                                                          tAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAt                  <  1:3096930/91‑1 (MQ=255)

                                                                            ggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtct                >  2:345604‑M2/15‑91 (MQ=255)

                                                                             gtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAATAGGTTCTAAAATAATCACAAAAAATGCAtctc               <  2:5483179‑M2/78‑1 (MQ=255)

                                                                             gtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtctc               <  1:4085723‑M2/78‑1 (MQ=255)

                                                                               ttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa             >  2:224422‑M2/12‑91 (MQ=255)

                                                                               ttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa             <  2:5305838‑M2/80‑1 (MQ=255)

                                                                                 actgcttttGTTTTTTGTAAAAATAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg           >  2:4736823‑M2/10‑91 (MQ=255)

                                                                                 actgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg           >  2:2851977‑M2/10‑91 (MQ=255)

                                                                                 actgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg           >  2:778576‑M2/10‑91 (MQ=255)

                                                                                 actgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg           >  1:1326958‑M2/10‑91 (MQ=255)

                                                                                    gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc        >  1:1860147‑M2/7‑91 (MQ=255)

                                                                                    gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc        <  2:977451‑M2/85‑1 (MQ=255)

                                                                                    gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc        <  2:1865216‑M2/85‑1 (MQ=255)

                                                                                    gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc        <  2:3622943‑M2/85‑1 (MQ=255)

                                                                                    gcttttGTTTTTCGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc        <  2:3801705‑M2/85‑1 (MQ=255)

                                                                                       tttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCtaa     >  2:3316484‑M2/4‑90 (MQ=255)

                                                                                       tttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAg     <  1:729226‑M2/88‑1 (MQ=255)

                                                                                         tGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa   <  2:1588737‑M2/90‑1 (MQ=255)

CCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAAT  >  USA300TCH1516_ALE/1456900‑1457080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.