BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2031750 =	201 (0.670)	16 (0.070) +CTTTGTTGGGGCCCC	3/130	NT	7.1%	intergenic (+216/+274)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	2866835 =	312 (1.050)	16 (0.070) +CTTTGTTGGGGCCCC	3/130	NT	7.1%	intergenic (‑234/+219)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein

Only 100 of 281 total aligned reads displayed.

TGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACT  >  USA300TCH1516_ALE/2031660‑2031840

gctctacgaagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaaga                                                                                            >  1:3574853‑M1/91‑91 (MQ=255)

 ctctacgaagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagag                                                                                           >  2:444871‑M1/90‑91 (MQ=255)

  gggCCCACACCCGAACTTGAAGTGTCTGGAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGa                                                                                          <  2:3907065/91‑1 (MQ=17)

   ctacgaagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagAGaa                                                                                         <  2:3444867‑M1/4‑1 (MQ=255)

   ctacgaagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagAGaa                                                                                         <  2:3049938‑M1/4‑1 (MQ=255)

   ctacgaagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagAGaa                                                                                         >  2:3035792‑M1/88‑91 (MQ=255)

    tcccACACCCCAACTTGCATTGTCTGGAAAAATTGGGTATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGaaa                                                                                        <  2:4031451/90‑1 (MQ=17)

    gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGaaa                                                                                        >  1:3392646/1‑91 (MQ=255)

      ccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAAtt                                                                                      >  1:2248235/1‑91 (MQ=255)

       gaagttatattggcagtagttgactgaacgaaaatgcgcttgtgacaagcttttttcaattctagtcaggggccccaacaaagAGAAATTg                                                                                     >  2:2701556‑M1/84‑91 (MQ=255)

       gaagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagAGAAATTg                                                                                     >  2:433713‑M1/84‑91 (MQ=255)

       gaagtgatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagAGAAATTg                                                                                     >  2:2216189‑M1/84‑91 (MQ=255)

       cacaCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTg                                                                                     >  1:90995/1‑91 (MQ=255)

        acacCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACGCCCAAACTTGCATTGTCTGTAGAGAGTgg                                                                                    >  2:1013449/1‑91 (MQ=14)

        acacCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTgg                                                                                    >  1:5115632/1‑91 (MQ=255)

        aagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagAGAAATTgg                                                                                    >  1:5414506‑M1/83‑91 (MQ=255)

        aagttatattggcagtagttgactgaacgaaaatgcgcttgtaacaagcttttttcaattctagtaaggggccccaacaaagAGAAATTgg                                                                                    <  2:5444820‑M1/9‑1 (MQ=255)

          acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTATCCTTAGAACTTgggc                                                                                  >  2:4439191/1‑90 (MQ=14)

           ccccAACTTGCATTGTCTGTAGAAATTGGGAATCCACTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGaa                                                                                 >  1:1957133/1‑91 (MQ=255)

           ccccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTggatt                                                                                 <  1:2615120/91‑4 (MQ=255)

             ccAACTTGCATTGTCTGTAGAAATTTGGAATCTAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                               <  2:679157/91‑1 (MQ=255)

             ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                               <  1:3887855/91‑1 (MQ=255)

             ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                               >  1:1544679/1‑91 (MQ=255)

               agcTTGGATTGTCTGTGGAAATTGCGAGTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCa                                                                             <  2:1818820/89‑1 (MQ=18)

                   acagagaatttcgaaaagaaattctacaggcaaagcgagttggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAttt                                                                         >  1:3048563‑M2/46‑91 (MQ=255)

                    gctttGTCTGCAAGAATTGAGAATCCAAGTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGCGCATCCAATTtc                                                                        <  2:749449/88‑1 (MQ=14)

                    gCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtc                                                                        >  1:762926/1‑91 (MQ=255)

                    gCATTGTCGGTAAAAATTGCTAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtc                                                                        <  2:3153440/91‑1 (MQ=17)

                      aTTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtctc                                                                      <  1:5310885/91‑1 (MQ=255)

                       ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTctct                                                                     <  1:2765167/91‑1 (MQ=255)

                          tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                  >  1:2587333/1‑91 (MQ=255)

                          tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                  <  1:3228619/91‑1 (MQ=255)

                           cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgt                                                                 >  1:1204969/1‑91 (MQ=255)

                           cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgt                                                                 >  1:239359/1‑91 (MQ=255)

                            tGTAGAAATTGGGATTCGAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgtt                                                                <  1:2201872/91‑1 (MQ=255)

                             gTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgttg                                                               >  1:3655665/1‑91 (MQ=255)

                                gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTgggg                                                            >  1:698101/1‑91 (MQ=255)

                                gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTgggg                                                            >  1:4732884/1‑91 (MQ=255)

                                 aaaTTGCGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGc                                                           <  2:3695003/91‑1 (MQ=255)

                                     tGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTTTATTAATTGCGAATCCAACTTCTCTTTGTTGGGGCCCCt                                                       >  2:4879144/1‑91 (MQ=17)

                                     tGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCt                                                       <  1:5182991/91‑1 (MQ=255)

                                      gggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTATAAATTGGGAATCCAATTTCTCTTTGTTGGTTCCCCTg                                                      >  2:1745839/1‑91 (MQ=255)

                                      gggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTg                                                      >  1:5508853/1‑91 (MQ=255)

                                      gggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTg                                                      >  1:1316272/1‑91 (MQ=255)

                                      gggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTg                                                      <  2:1606993/91‑1 (MQ=255)

                                      gggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTg                                                      >  1:3015318/1‑91 (MQ=255)

                                       ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTATAAATTGGGCATCCAATTTCTCTTTGTTGGGGCCCCTGa                                                     >  2:4189770/1‑91 (MQ=255)

                                       ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGa                                                     <  1:1831075/91‑1 (MQ=255)

                                        gAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGAc                                                    <  1:1013449/91‑1 (MQ=255)

                                         aaTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACt                                                   <  2:4815505/91‑1 (MQ=255)

                                           cccAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAg                                                 >  1:4323482/2‑91 (MQ=255)

                                            ccAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGa                                                <  2:4737109/91‑1 (MQ=255)

                                            ccAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGa                                                <  2:5710100/91‑1 (MQ=255)

                                            ccAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGa                                                <  1:108887/91‑1 (MQ=255)

                                             cAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGaa                                               >  2:1074979/1‑91 (MQ=255)

                                               aTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAAtt                                             >  2:4246549/1‑91 (MQ=255)

                                                  tctcTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaa                                          <  1:3980739/91‑1 (MQ=255)

                                                     ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaa                                       <  1:5038060/91‑1 (MQ=255)

                                                     ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaa                                       <  1:5691145/91‑1 (MQ=255)

                                                      tttGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaaa                                      <  2:2886207/91‑1 (MQ=255)

                                                       ttgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAg                                     >  2:2102169/1‑91 (MQ=255)

                                                         gttggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCt                                   <  1:3730696‑M2/84‑1 (MQ=255)

                                                          ttggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCtt                                  <  1:1265270‑M2/85‑1 (MQ=255)

                                                          ttggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCtt                                  <  2:261224‑M2/85‑1 (MQ=255)

                                                           tggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTg                                 >  1:3075960‑M2/6‑91 (MQ=255)

                                                            ggggCCCACACCCCAACTTGCATTGCCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTCGGGCCCCTGACTAGAATTCAAAAAAGCTtgc                                >  2:4542155‑M2/5‑90 (MQ=255)

                                                             gggCCCACAGCCCAACCTGCATTGTCTGTCGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGtt                               >  1:5370912‑M2/4‑91 (MQ=255)

                                                              ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                  <  2:2559787‑M2/53‑1 (MQ=255)

                                                               gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGa                                                     <  1:4934103‑M2/66‑1 (MQ=255)

                                                               gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGGAAAAAGCTTGTTAc                             >  2:5163788‑M2/2‑91 (MQ=255)

                                                               gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTAc                             >  2:1338255‑M2/2‑91 (MQ=255)

                                                               gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTAc                             >  1:2904010‑M2/2‑91 (MQ=255)

                                                                 ccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACaa                           >  1:5782548/1‑91 (MQ=255)

                                                                   acacCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgc                         >  2:3518152/1‑91 (MQ=255)

                                                                     acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                       <  1:1420833/91‑1 (MQ=255)

                                                                     acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                       >  1:5583883/1‑91 (MQ=255)

                                                                       cccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                     >  2:5289944/1‑91 (MQ=255)

                                                                       cccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                     <  1:4376097/91‑1 (MQ=255)

                                                                         cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCCttt                   >  2:5323606/1‑91 (MQ=255)

                                                                         cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt                   <  2:2405355/91‑1 (MQ=255)

                                                                          aaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                  <  1:4360971/91‑1 (MQ=255)

                                                                          aaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                  >  2:5157214/1‑91 (MQ=255)

                                                                           aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTc                 >  2:3580973/1‑91 (MQ=255)

                                                                           aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTc                 >  1:5220312/1‑91 (MQ=255)

                                                                            cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                <  1:2865287/91‑1 (MQ=255)

                                                                            cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                <  1:3816319/91‑1 (MQ=255)

                                                                             ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt               >  1:3501170/1‑91 (MQ=255)

                                                                             ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt               >  1:606854/1‑91 (MQ=255)

                                                                               gCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTc             >  2:5092306/1‑91 (MQ=255)

                                                                                 tttGTCTGTAGAAATTGGGAATGCAACTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg           <  2:5772699/90‑1 (MQ=255)

                                                                                 aTTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg           <  1:250427/91‑1 (MQ=255)

                                                                                 aTTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg           <  1:2412613/91‑1 (MQ=255)

                                                                                   tGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc         <  2:2746347/91‑1 (MQ=255)

                                                                                     tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa       <  1:4172423/91‑1 (MQ=255)

                                                                                      cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGTATTTTCGTTCAGTCAac      <  2:597474/91‑1 (MQ=255)

                                                                                      cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac      <  1:1411025/91‑1 (MQ=255)

                                                                                      cTGTAGAAATTGGGAATCCAATGTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac      <  2:853801/91‑1 (MQ=255)

                                                                                       tGTAGAAATTGGGAATCCAATTTCTCTTTGTGGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact     <  2:3015373/91‑1 (MQ=255)

                                                                                         tAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac   >  2:1959596/1‑91 (MQ=255)

                                                                                          aGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact  >  2:4138880/1‑91 (MQ=255)

TGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACT  >  USA300TCH1516_ALE/2031660‑2031840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.