| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2031750 = | 201 (0.670) | 16 (0.070) +CTTTGTTGGGGCCCC |
3/130 | NT | 7.1% | intergenic (+216/+274) | USA300HOU_RS10250/USA300HOU_RS10255 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2866835 = | 312 (1.050) | intergenic (‑234/+219) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
Only 100 of 471 total aligned reads displayed.
TCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTT > USA300TCH1516_ALE/2866745‑2866924 | tCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGtt > 2:2880744/1‑91 (MQ=255)tCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGtt > 2:4205804/1‑91 (MQ=255) cAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTg < 1:222073/91‑1 (MQ=255) tgcgcttgtaacaagcttttttcaattctagtcaggggccccaacaaagagaaattgggaatccaatttctctttgttggggccccTGACt < 1:3049938‑M2/5‑1 (MQ=255) aaaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGa > 2:4611374/1‑91 (MQ=255) aaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGaa > 2:2211691/1‑91 (MQ=255) aGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAAt < 2:5003824/91‑1 (MQ=255) tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTg > 2:2792358/1‑91 (MQ=255) tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTg > 2:5527108/1‑91 (MQ=255) atatCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGa < 2:4383067/91‑1 (MQ=255) atatCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGa > 2:5131405/1‑91 (MQ=255) atCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaa < 1:2114870/91‑1 (MQ=255) tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaa < 1:5650923/91‑1 (MQ=255) ccAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaaa < 2:3353819/91‑1 (MQ=255) ccAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAAATTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaaa < 1:4403784/91‑1 (MQ=255) gCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAATGTTGACTAGAATTGAAAAAAGc < 2:4474912/91‑1 (MQ=255) gCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc > 1:3830801/1‑91 (MQ=255) gCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc < 2:4581580/91‑1 (MQ=255) aaaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGt < 1:1218185/91‑1 (MQ=255) aaaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGt > 1:3586091/1‑91 (MQ=255) aaaTTAGGGACTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCTGCAAGGTTGACTAGAATTGAAAAAAGCTTGt < 1:5355216/91‑1 (MQ=255) tAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGACGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACa > 1:4575200/1‑91 (MQ=255) aGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACaa < 1:3944200/91‑1 (MQ=39) gggAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg < 2:2571530/91‑1 (MQ=39) gAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg > 2:1408312/1‑91 (MQ=39) aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc < 2:633251/91‑1 (MQ=39) aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc < 2:1231060/91‑1 (MQ=39) aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc < 2:5712888/91‑1 (MQ=38) aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc < 1:2833135/91‑1 (MQ=39) aGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc < 2:308511/91‑1 (MQ=39) aGTGGGACAGAAATGATATTTTCGCAAAATCTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc < 1:4518515/91‑1 (MQ=255) tGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt > 1:1277647/1‑91 (MQ=255) gggACAGAAATGATATTTTCGCAAAATTTATTGCGTCGTCCCACCCCAGCAAGGTTGACTATAATTGAAAAAAGCTTGTTACAAGCGCAtt < 1:2567827/91‑1 (MQ=255) ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt < 1:1725903/91‑1 (MQ=255) ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt < 1:2877113/91‑1 (MQ=255) gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt < 1:1486892/91‑1 (MQ=255) cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg < 1:2054520/91‑1 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa < 2:821861/91‑1 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa > 1:347967/1‑91 (MQ=255) atTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCTTTCAGTCAac > 2:2381990/1‑91 (MQ=255) ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact < 1:5132820/91‑1 (MQ=255) tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta > 1:877649/1‑91 (MQ=255) tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta > 1:3241629/1‑91 (MQ=40) ttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac < 2:1764930/91‑1 (MQ=255) ttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac < 2:3568084/91‑1 (MQ=255) tCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact < 2:3508351/91‑1 (MQ=255) cGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg < 1:4120634/91‑1 (MQ=255) aaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACAAAAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa < 2:2178178/91‑1 (MQ=255) aaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat < 1:1901864/91‑1 (MQ=40) aaTGTATTTCTTCGTCCTACCCCAGCATGTTTGAAAAAAATAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat < 2:4302061/91‑1 (MQ=14) atttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata < 1:3334196/91‑1 (MQ=255) atttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATAGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata < 2:5332831/91‑1 (MQ=255) tttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat < 2:3638864/91‑1 (MQ=255) ttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata > 1:1994780/1‑91 (MQ=40) atttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc < 1:4776095/91‑1 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt > 1:2675943/1‑91 (MQ=255) ccaatttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt > 1:5414506‑M2/25‑91 (MQ=255) tcgtcgTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc < 1:4919487/91‑1 (MQ=255) tcgtcgTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc > 1:3716032/1‑91 (MQ=255) caatttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc > 2:433713‑M2/24‑91 (MQ=255) caatttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc > 2:5611006‑M2/24‑91 (MQ=255) caatttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTCACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc > 2:2701556‑M2/24‑91 (MQ=255) gtcgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGt > 1:5306572/1‑91 (MQ=255) atttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCATTCAACTACTGCCAATATAACTTCGt > 2:5437323‑M2/22‑91 (MQ=255) atttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGt < 1:4246549‑M2/70‑1 (MQ=255) ttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag > 2:3035792‑M2/20‑91 (MQ=255) ttctctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag < 2:2626929‑M2/72‑1 (MQ=255) cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag > 1:1005217/1‑91 (MQ=255) cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag < 1:2335885/91‑1 (MQ=255) taccACCCCAGCAAGGTTGACTAGAATTGAAAAAGGCTTGTTACAAGCGCATTTTTATTCAGTCAACTACCGCCAATATAACTTCGTaaag > 2:4898070/3‑91 (MQ=14) ctttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa < 2:2256035‑M2/76‑1 (MQ=255) tttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCAt > 1:444692‑M2/15‑91 (MQ=255) tttgttcgggccacTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATGTTCGTTCAGTCCACTACTGCCAATATAACTTCGTAGAGCAt > 2:3199087‑M2/15‑91 (MQ=255) ttgttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa > 1:1079498‑M2/14‑91 (MQ=255) aCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa < 2:151336/91‑1 (MQ=255) aCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa > 2:1183437/1‑91 (MQ=255) ggttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg < 1:1828678‑M2/79‑1 (MQ=255) ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg > 1:3567248/1‑91 (MQ=255) ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg < 1:5527108/91‑1 (MQ=255) gttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa > 2:755950‑M2/12‑91 (MQ=255) gttggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa < 1:641116‑M2/80‑1 (MQ=255) cccAGCGAGGTTGACTAGAATTGAAAAAAGCTTGTTACTAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa < 1:4901295/91‑1 (MQ=255) cAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAAc < 2:3831392/91‑1 (MQ=40) ggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 2:2019379‑M2/83‑1 (MQ=255) ggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 1:2956892‑M2/83‑1 (MQ=255) ggggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 1:4038348‑M2/83‑1 (MQ=255) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa > 2:1135443/1‑91 (MQ=38) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 2:389909/91‑1 (MQ=39) gggccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt > 2:4729068‑M2/8‑91 (MQ=255) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt > 1:76819/1‑91 (MQ=38) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt < 1:4205804/91‑1 (MQ=38) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt > 2:1921996/1‑91 (MQ=38) cAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAtt < 1:1167029/91‑1 (MQ=37) aGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGa > 1:4601216/1‑91 (MQ=34) aGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGa > 1:4340285/1‑91 (MQ=34) cccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt > 1:5737681‑M2/4‑91 (MQ=255) cccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt < 1:3132942‑M2/88‑1 (MQ=255) cccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt > 1:1389134‑M2/4‑91 (MQ=255) ccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATCTAACTTCGTAGAGCATAGAACATTGAtt > 2:2130882‑M2/3‑91 (MQ=255) ccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt > 1:987061‑M2/3‑91 (MQ=255) | TCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTT > USA300TCH1516_ALE/2866745‑2866924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |