BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 64	638 (0.610)	12 (0.020) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT	5/94	NT	6.1%	intergenic (–/‑168)	–/repA	–/replication protein A
*	?	CP000731	= 27041	0 (0.000)	12 (0.020) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT	5/94	NT	6.1%	intergenic (‑194/–)	USA300HOU_pUSA300HOUMR0033/–	partitioning protein/–

Only 100 of 1067 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAC  >  CP000731/1‑147

ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGt                                                                                  <  1:4066293‑M1/67‑1 (MQ=255)

ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGt                                                                                  >  2:4141587‑M1/25‑91 (MQ=255)

 tatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGta                                                                                 <  2:3917815‑M1/68‑1 (MQ=255)

 tatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGta                                                                                 >  1:5086942‑M1/24‑91 (MQ=255)

  atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                >  2:4044001‑M1/23‑91 (MQ=255)

  atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                >  1:1475376‑M1/23‑91 (MQ=255)

  atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                >  2:3846852‑M1/23‑91 (MQ=255)

        tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                          >  1:498808‑M1/17‑91 (MQ=255)

        tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                          >  1:66703‑M1/17‑91 (MQ=255)

          ccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGt                                                                        <  2:1440975‑M1/77‑1 (MQ=255)

          ccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGt                                                                        <  1:254196‑M1/77‑1 (MQ=255)

           cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGtt                                                                       <  2:2425098‑M1/78‑1 (MQ=255)

           cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGtt                                                                       >  1:5788367‑M1/14‑91 (MQ=255)

              ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                    <  2:1243779‑M1/81‑2 (MQ=255)

              tcgaaaattatataaataaacagtttctaaacgttttattaccAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                    >  2:4573355‑M1/44‑90 (MQ=255)

                ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                  <  1:2259925‑M1/83‑1 (MQ=255)

                ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                  >  2:2028660‑M1/9‑91 (MQ=255)

                 taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaaa                                                                 >  1:3040605‑M1/8‑91 (MQ=255)

                 taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaaa                                                                 >  2:1877403‑M1/8‑91 (MQ=255)

                  aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                >  1:2801835‑M1/7‑91 (MQ=255)

                  aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                >  2:2640089‑M1/7‑91 (MQ=255)

                  aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                <  1:3385987‑M1/85‑1 (MQ=255)

                   agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTACTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                               >  2:3471363‑M1/6‑91 (MQ=255)

                    gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                              >  1:5165658‑M1/5‑91 (MQ=255)

                    gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                              >  1:5458656‑M1/5‑91 (MQ=255)

                     tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             <  1:1028405‑M1/88‑1 (MQ=255)

                     tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             >  1:46749‑M1/4‑91 (MQ=255)

                         tttAACGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACAGGTAATAGTCGGGGTTTGGTAATAAAACGCTTAGAAACTGtttat                                                         >  2:5747770/1‑91 (MQ=255)

                         tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                         >  2:533408/1‑91 (MQ=255)

                         tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                         >  1:3606691/1‑91 (MQ=255)

                          ttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttatt                                                        <  1:1554200/91‑1 (MQ=255)

                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  1:884961/91‑1 (MQ=255)

                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  2:3622683/91‑1 (MQ=255)

                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  1:3727941/91‑1 (MQ=255)

                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  1:45660/91‑1 (MQ=255)

                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  1:186438/91‑1 (MQ=255)

                            aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                      <  1:3156881/91‑1 (MQ=255)

                             aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:4443646/91‑1 (MQ=255)

                             aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:1341767/91‑1 (MQ=255)

                             aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  2:2184471/91‑1 (MQ=255)

                             aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  2:1650571/91‑1 (MQ=255)

                             aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:3211475/91‑1 (MQ=255)

                              aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                    >  2:2553142/1‑91 (MQ=255)

                              aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                    >  1:1947281/1‑91 (MQ=255)

                               gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                   <  1:3872427/91‑1 (MQ=255)

                                tGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatata                                                  >  2:610969/1‑91 (MQ=255)

                                  cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                <  2:1175124/91‑1 (MQ=255)

                                  cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                >  1:3978336/1‑91 (MQ=255)

                                   tataATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtt                                               >  1:2858562/1‑91 (MQ=255)

                                    ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTTTTTATTTATATAAttt                                              <  2:4983518/91‑1 (MQ=255)

                                    ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                              <  1:2652530/91‑1 (MQ=255)

                                    ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCAGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                              <  2:5661136/91‑1 (MQ=255)

                                      aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            >  2:4643656/1‑91 (MQ=255)

                                      aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            <  2:1581391/91‑1 (MQ=255)

                                       ataaACTTAATATATCAAAAACCCCGACGTCTGGGAATAGTCGGGGGTTGGTAATAAAACGTTTAGAAGCTGTTTATTTATATAAttttgg                                           <  2:2776935/91‑3 (MQ=255)

                                         aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                         >  1:1123392/1‑91 (MQ=255)

                                         aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                         <  2:2334008/91‑1 (MQ=255)

                                           aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                       >  1:4367770/1‑91 (MQ=255)

                                           aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGCTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                       >  2:5410316/1‑91 (MQ=255)

                                            cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                      <  2:2847391/91‑1 (MQ=255)

                                              tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                    >  1:1760275/1‑91 (MQ=255)

                                               aaTATAACAAAAGCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                   <  2:3751803/91‑1 (MQ=255)

                                                atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                  <  2:3359285/91‑1 (MQ=255)

                                                atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                  >  1:5634258/1‑91 (MQ=255)

                                                atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                  >  1:351974/1‑91 (MQ=255)

                                                atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                  <  2:4783118/91‑1 (MQ=255)

                                                   tcaCAAAAACCCCAACTACTGGTAATAGTCGAGGTTTGGTCATAAAACGTTTCGAAACAGTTTAGTTATATACTTCTCGATACTAGtacta                               >  1:4889661/3‑91 (MQ=255)

                                                    aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                              >  2:1039587/1‑91 (MQ=255)

                                                     aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATATTTTTCGATACTTGTATtata                             <  1:5343593/91‑1 (MQ=255)

                                                      cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                            >  1:4157551/1‑91 (MQ=255)

                                                         AAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAt                         >  2:913578‑M1/1‑91 (MQ=255)

                                                          AACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                        >  2:3223316‑M1/1‑91 (MQ=255)

                                                           ACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                       <  1:3000485‑M1/91‑1 (MQ=255)

                                                            ccccAACTACTGGTAATAGTCGGGGTTTttgttatattaagtttattatagcactttaaataaacatataaacgggaaaatatagctttat                      >  2:2907905‑M1/1‑28 (MQ=255)

                                                             CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     <  2:448326‑M1/91‑1 (MQ=255)

                                                             CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGCTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     <  2:3040767‑M1/91‑1 (MQ=255)

                                                              CCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                    <  2:3962339‑M1/91‑1 (MQ=255)

                                                               CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                   >  1:4795909‑M1/1‑91 (MQ=255)

                                                               CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTANATAATGaataa                   <  2:175898‑M1/91‑1 (MQ=255)

                                                                aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTTTATAATGaataat                  >  2:194902/1‑91 (MQ=255)

                                                                aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                  >  2:5104830/1‑91 (MQ=255)

                                                                aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                  >  1:2419148/1‑91 (MQ=255)

                                                                 actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                 <  2:1313859/91‑1 (MQ=255)

                                                                   tactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc               <  1:2899979/91‑1 (MQ=255)

                                                                   tactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc               <  1:1168781/91‑1 (MQ=255)

                                                                   tactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc               <  1:1243779/91‑1 (MQ=255)

                                                                     ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             <  2:3137692/91‑1 (MQ=255)

                                                                     ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             >  2:4901405/1‑91 (MQ=255)

                                                                      tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTa            >  2:2996140/1‑91 (MQ=255)

                                                                       ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           <  2:4183696/91‑1 (MQ=255)

                                                                         tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg         <  2:524999/91‑1 (MQ=255)

                                                                             aGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAg     <  1:2129196/91‑1 (MQ=255)

                                                                             aGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAg     <  1:1676859/91‑1 (MQ=255)

                                                                              gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc    >  2:76095/1‑91 (MQ=255)

                                                                              gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc    <  1:769175/91‑1 (MQ=255)

                                                                              gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc    >  2:4360250/1‑91 (MQ=255)

                                                                               tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa   <  1:2018098/91‑1 (MQ=255)

                                                                                cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  >  1:2715725/1‑91 (MQ=255)

                                                                                cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  <  1:3293807/91‑1 (MQ=255)

                                                                                cGGGGTTTGCTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  <  2:5543234/91‑1 (MQ=255)

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAC  >  CP000731/1‑147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.