New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 12646219 (0.210)14 (0.010) 9/146 NT 6.6% coding (140/675 nt) USA300HOU_pUSA300HOUMR0016 IS257 transposase
?CP000731 = 12648 NA (NA)coding (142/675 nt) USA300HOU_pUSA300HOUMR0016 IS257 transposase

Only 100 of 500 total aligned reads displayed.

CTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA  >  CP000731/12556‑12736
                                                                                          |                                                                                          
gtctcatcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatataaaattggggcatattcttgaaccCAACGGt                                                                                            <  2:2543781‑M1/7‑1 (MQ=255)
cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                                            >  2:2040742‑M1/1‑91 (MQ=255)
cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                                            <  2:5146240‑M1/91‑1 (MQ=255)
cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                                            >  2:1294216‑M1/1‑91 (MQ=255)
cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                                            >  1:5123381‑M1/1‑91 (MQ=255)
 tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGGTATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc                                                                                           <  1:4844332/91‑1 (MQ=14)
 tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc                                                                                           <  2:4808578/91‑1 (MQ=31)
 tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc                                                                                           <  1:5364289/91‑1 (MQ=31)
 tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc                                                                                           <  1:3782393/91‑1 (MQ=31)
   ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga                                                                                         <  1:5028643‑M1/91‑4 (MQ=255)
   ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga                                                                                         <  2:2830136‑M1/91‑4 (MQ=255)
    catcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatatagaattggggcatattcttgaaccCAACGGTCTAc                                                                                        >  2:1804332‑M1/81‑91 (MQ=255)
    catcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatataaaattggggcatattcttgaaccCAACGGTCTAc                                                                                        >  1:2119741‑M1/81‑91 (MQ=255)
      gCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccg                                                                                      <  1:2442542‑M1/91‑7 (MQ=255)
       caatacgccatttgtaataagcttttttatgctttttcttccaaatttgatataaaattggggcatattcttgaaccCAACGGt                                                                                            >  1:715402‑M1/78‑84 (MQ=255)
        tactaTCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccgtt                                                                                    <  1:5860067‑M1/91‑9 (MQ=255)
                                                           taaaattggggcatattcttgaaccCAACGGTAGAACGTTGCGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATa                                 <  1:5794680‑M1/66‑1 (MQ=255)
                                                           gAACGTGGTGTAAACGTTCATCATTCAACGATctaccgttgaatgatgaacgtttacaccacgttctcttaatatttcagatatatcacga                                 >  1:760245‑M1/1‑32 (MQ=255)
                                                              cGTGGTGTAAACGTTCATCATTCAACGATctaccgttgaatgatgaacgtttacaccacgttctcttaatatttcagatatatcacgatag                              >  1:2008990‑M1/1‑29 (MQ=255)
                                                                tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa                            <  2:3932874/91‑1 (MQ=31)
                                                                 ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg                           <  1:4786927/91‑1 (MQ=32)
                                                                 ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg                           >  2:1366919/1‑91 (MQ=32)
                                                                  gtgtAAACGTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactca                          >  2:230261‑M1/1‑25 (MQ=255)
                                                                   tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt                         <  2:2460228/91‑1 (MQ=33)
                                                                    gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  2:1214566/91‑1 (MQ=34)
                                                                    gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  1:1848906/91‑1 (MQ=34)
                                                                    gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  2:2706258/91‑1 (MQ=33)
                                                                     tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta                       >  1:3004263/1‑91 (MQ=34)
                                                                      aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat                      <  1:2338949/91‑1 (MQ=34)
                                                                      aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat                      <  2:5529887/91‑1 (MQ=33)
                                                                       aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt                     <  1:849610/91‑1 (MQ=34)
                                                                       aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt                     <  1:3268663/91‑1 (MQ=34)
                                                                       aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt                     <  1:1517871/91‑1 (MQ=34)
                                                                         cGTTCATCATTCAACGGTCTACCGTTGGGTTCACGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTAc                   >  1:3322895/1‑91 (MQ=18)
                                                                          gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa                  >  1:1053396/1‑91 (MQ=34)
                                                                          gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa                  <  1:3221055/91‑1 (MQ=34)
                                                                           ttCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaa                 <  2:1922789/91‑1 (MQ=33)
                                                                            tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaga                >  1:4037334/1‑89 (MQ=21)
                                                                            tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATCTTATATCAATTTTGGAAGAAAAAGCATAAAAAAGCTTATTACaaa                <  2:5645153/91‑1 (MQ=16)
                                                                             catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAACAAGCTTACTACAAAt               >  2:4510340/1‑91 (MQ=255)
                                                                             catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt               >  1:2951406/1‑91 (MQ=34)
                                                                              atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              >  2:3461162/1‑91 (MQ=34)
                                                                              atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              >  1:5464368/1‑91 (MQ=34)
                                                                              atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              >  1:1928445/1‑91 (MQ=34)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:1860586/91‑1 (MQ=34)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:4593339/91‑1 (MQ=33)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:1352365/91‑1 (MQ=34)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:3090940/91‑1 (MQ=34)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:3909751/91‑1 (MQ=34)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:1005438/91‑1 (MQ=34)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:1711101/91‑1 (MQ=33)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             >  2:630818/1‑91 (MQ=33)
                                                                               tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:4142539/91‑1 (MQ=33)
                                                                                 atTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCg           >  1:5297331/1‑91 (MQ=34)
                                                                                  ttCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  2:73022/77‑1 (MQ=34)
                                                                                  ttCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGt          <  1:2298396/91‑1 (MQ=34)
                                                                                   tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         >  2:4060449/1‑91 (MQ=34)
                                                                                   tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         <  2:1114260/91‑1 (MQ=33)
                                                                                   tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         >  1:422052/1‑91 (MQ=34)
                                                                                   tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         <  2:1525799/91‑1 (MQ=33)
                                                                                   tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         >  2:1741914/1‑91 (MQ=34)
                                                                                    cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt        <  2:3336294‑M1/91‑85 (MQ=255)
                                                                                    cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt        <  2:3026411‑M1/91‑85 (MQ=255)
                                                                                    cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt        >  2:364728‑M1/1‑7 (MQ=255)
                                                                                     aaCGGTagaccgttgaatgatgaacgtttacaccacgttcccttgatatttcagatatatcacgataactcaatgcatatcttagatagta       >  1:3667988‑M1/1‑6 (MQ=255)
                                                                                     aaCGGTagaccgttgaaggatgaacggttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagta       <  1:5239434‑M1/91‑86 (MQ=255)
                                                                                     AACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAGATGGCGTAtt       >  2:4881679‑M1/1‑91 (MQ=255)
                                                                                     AACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAtt       >  2:5261926‑M1/1‑91 (MQ=255)
                                                                                      aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag      >  1:2602208‑M1/1‑5 (MQ=255)
                                                                                      aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag      >  2:3492432‑M1/1‑5 (MQ=255)
                                                                                      aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag      >  2:4443844‑M1/1‑5 (MQ=255)
                                                                                      aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag      >  1:2202850‑M1/1‑5 (MQ=255)
                                                                                      aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag      >  1:1137836‑M1/1‑5 (MQ=255)
                                                                                      aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag      >  1:4442502‑M1/1‑5 (MQ=255)
                                                                                      ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      >  1:1278215‑M1/1‑91 (MQ=255)
                                                                                      ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      <  2:3803675‑M1/91‑1 (MQ=255)
                                                                                      ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      <  1:463465‑M1/91‑1 (MQ=255)
                                                                                       cGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagc     <  2:772839‑M1/91‑88 (MQ=255)
                                                                                       cGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagc     >  1:163987‑M1/1‑4 (MQ=255)
                                                                                       CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga     >  2:5067340‑M1/1‑91 (MQ=255)
                                                                                       CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga     <  1:4310064‑M1/91‑1 (MQ=255)
                                                                                       CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga     <  2:5768942‑M1/91‑1 (MQ=255)
                                                                                        ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc    <  2:2198052‑M1/91‑89 (MQ=255)
                                                                                        ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt        <  1:2514844‑M1/87‑85 (MQ=255)
                                                                                        GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    >  1:5671922‑M1/1‑91 (MQ=255)
                                                                                        GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    >  1:4085652‑M1/1‑91 (MQ=255)
                                                                                        GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    <  2:2413164‑M1/91‑1 (MQ=255)
                                                                                        GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    <  2:4248843‑M1/91‑1 (MQ=255)
                                                                                         gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca   <  2:1577906‑M1/91‑90 (MQ=255)
                                                                                         gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca   >  1:2720530‑M1/1‑2 (MQ=255)
                                                                                         gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca   >  2:1016870‑M1/1‑2 (MQ=255)
                                                                                         GTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatg   <  2:3234066‑M1/91‑1 (MQ=255)
                                                                                          tagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagccaa  <  2:2940160‑M1/91‑91 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  1:4118397‑M1/91‑1 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  1:4535216‑M1/1‑91 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  1:3437863‑M1/91‑1 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:475572‑M1/91‑1 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:4361375‑M1/91‑1 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:3185920‑M1/91‑1 (MQ=255)
                                                                                          TCTACCGTTGGGTTCAAGAATATGCCCCAATTGTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  1:1436016‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
CTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA  >  CP000731/12556‑12736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.