New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000731 | = 12646 | 219 (0.210) | 14 (0.010) | 9/146 | NT | 6.6% | coding (140/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
? | CP000731 | = 12648 | NA (NA) | coding (142/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
Only 100 of 500 total aligned reads displayed.
CTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA > CP000731/12556‑12736 | gtctcatcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatataaaattggggcatattcttgaaccCAACGGt < 2:2543781‑M1/7‑1 (MQ=255) cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT > 2:2040742‑M1/1‑91 (MQ=255) cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT < 2:5146240‑M1/91‑1 (MQ=255) cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT > 2:1294216‑M1/1‑91 (MQ=255) cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT > 1:5123381‑M1/1‑91 (MQ=255) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGGTATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:4844332/91‑1 (MQ=14) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 2:4808578/91‑1 (MQ=31) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:5364289/91‑1 (MQ=31) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:3782393/91‑1 (MQ=31) ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga < 1:5028643‑M1/91‑4 (MQ=255) ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga < 2:2830136‑M1/91‑4 (MQ=255) catcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatatagaattggggcatattcttgaaccCAACGGTCTAc > 2:1804332‑M1/81‑91 (MQ=255) catcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatataaaattggggcatattcttgaaccCAACGGTCTAc > 1:2119741‑M1/81‑91 (MQ=255) gCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccg < 1:2442542‑M1/91‑7 (MQ=255) caatacgccatttgtaataagcttttttatgctttttcttccaaatttgatataaaattggggcatattcttgaaccCAACGGt > 1:715402‑M1/78‑84 (MQ=255) tactaTCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccgtt < 1:5860067‑M1/91‑9 (MQ=255) taaaattggggcatattcttgaaccCAACGGTAGAACGTTGCGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATa < 1:5794680‑M1/66‑1 (MQ=255) gAACGTGGTGTAAACGTTCATCATTCAACGATctaccgttgaatgatgaacgtttacaccacgttctcttaatatttcagatatatcacga > 1:760245‑M1/1‑32 (MQ=255) cGTGGTGTAAACGTTCATCATTCAACGATctaccgttgaatgatgaacgtttacaccacgttctcttaatatttcagatatatcacgatag > 1:2008990‑M1/1‑29 (MQ=255) tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa < 2:3932874/91‑1 (MQ=31) ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg < 1:4786927/91‑1 (MQ=32) ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg > 2:1366919/1‑91 (MQ=32) gtgtAAACGTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactca > 2:230261‑M1/1‑25 (MQ=255) tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt < 2:2460228/91‑1 (MQ=33) gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt < 2:1214566/91‑1 (MQ=34) gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt < 1:1848906/91‑1 (MQ=34) gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt < 2:2706258/91‑1 (MQ=33) tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta > 1:3004263/1‑91 (MQ=34) aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat < 1:2338949/91‑1 (MQ=34) aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat < 2:5529887/91‑1 (MQ=33) aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt < 1:849610/91‑1 (MQ=34) aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt < 1:3268663/91‑1 (MQ=34) aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt < 1:1517871/91‑1 (MQ=34) cGTTCATCATTCAACGGTCTACCGTTGGGTTCACGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTAc > 1:3322895/1‑91 (MQ=18) gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa > 1:1053396/1‑91 (MQ=34) gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa < 1:3221055/91‑1 (MQ=34) ttCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaa < 2:1922789/91‑1 (MQ=33) tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaga > 1:4037334/1‑89 (MQ=21) tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATCTTATATCAATTTTGGAAGAAAAAGCATAAAAAAGCTTATTACaaa < 2:5645153/91‑1 (MQ=16) catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAACAAGCTTACTACAAAt > 2:4510340/1‑91 (MQ=255) catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt > 1:2951406/1‑91 (MQ=34) atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg > 2:3461162/1‑91 (MQ=34) atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg > 1:5464368/1‑91 (MQ=34) atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg > 1:1928445/1‑91 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 2:1860586/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 2:4593339/91‑1 (MQ=33) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:1352365/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:3090940/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:3909751/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:1005438/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:1711101/91‑1 (MQ=33) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg > 2:630818/1‑91 (MQ=33) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 2:4142539/91‑1 (MQ=33) atTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCg > 1:5297331/1‑91 (MQ=34) ttCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt < 2:73022/77‑1 (MQ=34) ttCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGt < 1:2298396/91‑1 (MQ=34) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa > 2:4060449/1‑91 (MQ=34) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa < 2:1114260/91‑1 (MQ=33) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa > 1:422052/1‑91 (MQ=34) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa < 2:1525799/91‑1 (MQ=33) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa > 2:1741914/1‑91 (MQ=34) cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt < 2:3336294‑M1/91‑85 (MQ=255) cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt < 2:3026411‑M1/91‑85 (MQ=255) cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt > 2:364728‑M1/1‑7 (MQ=255) aaCGGTagaccgttgaatgatgaacgtttacaccacgttcccttgatatttcagatatatcacgataactcaatgcatatcttagatagta > 1:3667988‑M1/1‑6 (MQ=255) aaCGGTagaccgttgaaggatgaacggttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagta < 1:5239434‑M1/91‑86 (MQ=255) AACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAGATGGCGTAtt > 2:4881679‑M1/1‑91 (MQ=255) AACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAtt > 2:5261926‑M1/1‑91 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:2602208‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 2:3492432‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 2:4443844‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:2202850‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:1137836‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:4442502‑M1/1‑5 (MQ=255) ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg > 1:1278215‑M1/1‑91 (MQ=255) ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg < 2:3803675‑M1/91‑1 (MQ=255) ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg < 1:463465‑M1/91‑1 (MQ=255) cGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagc < 2:772839‑M1/91‑88 (MQ=255) cGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagc > 1:163987‑M1/1‑4 (MQ=255) CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga > 2:5067340‑M1/1‑91 (MQ=255) CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga < 1:4310064‑M1/91‑1 (MQ=255) CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga < 2:5768942‑M1/91‑1 (MQ=255) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc < 2:2198052‑M1/91‑89 (MQ=255) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt < 1:2514844‑M1/87‑85 (MQ=255) GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat > 1:5671922‑M1/1‑91 (MQ=255) GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat > 1:4085652‑M1/1‑91 (MQ=255) GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat < 2:2413164‑M1/91‑1 (MQ=255) GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat < 2:4248843‑M1/91‑1 (MQ=255) gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca < 2:1577906‑M1/91‑90 (MQ=255) gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca > 1:2720530‑M1/1‑2 (MQ=255) gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca > 2:1016870‑M1/1‑2 (MQ=255) GTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatg < 2:3234066‑M1/91‑1 (MQ=255) tagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagccaa < 2:2940160‑M1/91‑91 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga < 1:4118397‑M1/91‑1 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga > 1:4535216‑M1/1‑91 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga < 1:3437863‑M1/91‑1 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga < 2:475572‑M1/91‑1 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga < 2:4361375‑M1/91‑1 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga < 2:3185920‑M1/91‑1 (MQ=255) TCTACCGTTGGGTTCAAGAATATGCCCCAATTGTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga > 1:1436016‑M1/1‑91 (MQ=255) | CTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA > CP000731/12556‑12736 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |