BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 12646	219 (0.210)	14 (0.010)	9/146	NT	6.6%	coding (140/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase
*	?	CP000731	= 12648	NA (NA)	14 (0.010)	9/146	NT	6.6%	coding (142/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase

Only 100 of 334 total aligned reads displayed.

TGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA  >  CP000731/12560‑12736

catcaatacgccatttgtaataagcttttttatgctttttcttccaaatttgatatagaattggggcatattcttgaaccCAACGGTCTAc                                                                                        >  2:1804332‑M1/81‑91 (MQ=255)

   caatacgccatttgtaataagcttttttatgctttttcttccaaatttgatacaaaattggggcatattcttgaaccCAACGGTCTACCGt                                                                                     >  2:1775460‑M1/78‑91 (MQ=255)

                                                       taaaattggggcatattcttgaaccCAACGGTAGAACGTTGCGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATa                                 <  1:5794680‑M1/66‑1 (MQ=255)

                                                            tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa                            >  2:3933983/1‑91 (MQ=31)

                                                            tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa                            <  2:4220781/91‑1 (MQ=31)

                                                             ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg                           >  1:4822329/1‑91 (MQ=32)

                                                             ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg                           >  2:5103016/1‑91 (MQ=32)

                                                              gtgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGTATAAAAAAGc                          >  2:4670371/1‑91 (MQ=18)

                                                               tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt                         <  1:4082401/91‑1 (MQ=34)

                                                                gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  2:2706258/91‑1 (MQ=33)

                                                                gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        >  1:5044214/1‑91 (MQ=34)

                                                                gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  2:1214566/91‑1 (MQ=34)

                                                                gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        >  2:1369628/1‑91 (MQ=34)

                                                                gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt                        <  1:3887411/91‑1 (MQ=34)

                                                                 tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta                       >  1:3004263/1‑91 (MQ=34)

                                                                 tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta                       <  2:2552823/91‑1 (MQ=33)

                                                                  aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat                      <  1:2338949/91‑1 (MQ=34)

                                                                  aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat                      <  2:3694908/91‑1 (MQ=34)

                                                                  aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat                      <  2:4806861/91‑1 (MQ=34)

                                                                  aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat                      >  1:3735020/1‑91 (MQ=34)

                                                                   aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt                     <  1:3933983/91‑1 (MQ=34)

                                                                   aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt                     <  1:5272732/91‑1 (MQ=34)

                                                                   aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt                     <  1:447044/91‑1 (MQ=34)

                                                                    aCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatta                    <  2:1043068/91‑1 (MQ=34)

                                                                    aCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatta                    <  2:3206643/91‑1 (MQ=34)

                                                                     cGTTCATCATTCAACGGTCTACCGTTGGGTTCACGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTAc                   >  1:3322895/1‑91 (MQ=18)

                                                                      gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa                  <  1:4304034/91‑1 (MQ=34)

                                                                      gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa                  >  1:1053396/1‑91 (MQ=34)

                                                                      gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa                  <  1:3221055/91‑1 (MQ=34)

                                                                       ttCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaa                 <  2:3266460/91‑1 (MQ=33)

                                                                        tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaaa                <  2:743214/91‑1 (MQ=33)

                                                                        tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaaa                <  1:1175453/91‑1 (MQ=34)

                                                                         catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt               <  2:45792/91‑1 (MQ=33)

                                                                         catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt               >  2:2325619/1‑91 (MQ=34)

                                                                         catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt               <  2:563179/91‑1 (MQ=34)

                                                                          atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              <  1:1772162/91‑1 (MQ=34)

                                                                          atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              <  1:4113310/91‑1 (MQ=34)

                                                                          atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              >  1:1928445/1‑91 (MQ=34)

                                                                          atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              <  2:5243918/91‑1 (MQ=34)

                                                                          atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTATAAAACAAATTAGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg              >  1:1578544/1‑91 (MQ=11)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCGCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:3300238/91‑1 (MQ=18)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             >  2:630818/1‑91 (MQ=33)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:3807284/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:799040/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:893164/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:1005438/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:1842332/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:3250402/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             >  1:2489909/1‑91 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:1839341/91‑1 (MQ=33)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:5189666/91‑1 (MQ=33)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             >  1:2274527/1‑91 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  1:1301908/91‑1 (MQ=34)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAAAAGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:3555559/91‑1 (MQ=255)

                                                                           tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCAACAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg             <  2:4507153/91‑1 (MQ=16)

                                                                            catTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGTAAACGCATAAAAAAGCTTATTACAAATGGc            >  2:5799403/1‑91 (MQ=16)

                                                                            catTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGc            <  1:2615431/91‑1 (MQ=34)

                                                                            catTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGc            >  1:4426481/1‑91 (MQ=34)

                                                                            catTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGc            <  2:1873817/91‑1 (MQ=34)

                                                                             atTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCg           <  2:2911199/91‑1 (MQ=34)

                                                                              ttCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGt          <  1:2298396/91‑1 (MQ=34)

                                                                              ttCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGt          <  1:1347286/91‑1 (MQ=34)

                                                                               tCAACGGTTTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         <  2:2232677/91‑1 (MQ=18)

                                                                               tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         <  2:2052239/91‑1 (MQ=33)

                                                                               tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         >  1:422052/1‑91 (MQ=34)

                                                                               tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa         <  2:1525799/91‑1 (MQ=33)

                                                                                CAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAt        >  1:3647047‑M1/1‑91 (MQ=255)

                                                                                CAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAt        >  2:1130428‑M1/1‑91 (MQ=255)

                                                                                CAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAt        <  2:1564190‑M1/91‑1 (MQ=255)

                                                                                CAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAt        <  1:1104395‑M1/91‑1 (MQ=255)

                                                                                CAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAt        >  1:2181305‑M1/1‑91 (MQ=255)

                                                                                 AACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAtt       >  1:4056682‑M1/1‑91 (MQ=255)

                                                                                  ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      >  1:5552314‑M1/1‑91 (MQ=255)

                                                                                  ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      >  1:5854238‑M1/1‑91 (MQ=255)

                                                                                  ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      <  1:463465‑M1/91‑1 (MQ=255)

                                                                                  ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      >  2:3023382‑M1/1‑91 (MQ=255)

                                                                                  ACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg      <  1:1481542‑M1/91‑1 (MQ=255)

                                                                                   CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga     >  2:5067340‑M1/1‑91 (MQ=255)

                                                                                   CGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga     <  1:542973‑M1/91‑1 (MQ=255)

                                                                                    GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    >  1:5671922‑M1/1‑91 (MQ=255)

                                                                                    GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    >  2:801186‑M1/1‑91 (MQ=255)

                                                                                    GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    >  2:1928445‑M1/1‑91 (MQ=255)

                                                                                    GGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    <  2:2413164‑M1/91‑1 (MQ=255)

                                                                                    GGTCTACCGTTAGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat    >  2:345960‑M1/1‑91 (MQ=255)

                                                                                     GTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatg   <  1:4964465‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAGTTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:5416370‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  1:3398599‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  1:5338698‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:1281101‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:5713544‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  2:4124804‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  1:3177810‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  1:296276‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  1:2888732‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  2:4398504‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:4323985‑M1/91‑1 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCCAATTGTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  1:1436016‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCCCAAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  2:247710‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGGGTTCAAGAATATGCAACAATTTTATATCAAATATGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  >  2:477543‑M1/1‑91 (MQ=255)

                                                                                      TCTACCGTTGAGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatga  <  2:4884719‑M1/91‑1 (MQ=255)

TGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA  >  CP000731/12560‑12736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.