BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 17001	NA (NA)	31 (0.030)	9/148	NT	100%	coding (61/675 nt)	USA300HOU_pUSA300HOUMR0021	IS431 mec transposase
*	?	CP000731	= 17016	0 (0.000)	31 (0.030)	9/148	NT	100%	coding (46/675 nt)	USA300HOU_pUSA300HOUMR0021	IS431 mec transposase

Only 100 of 293 total aligned reads displayed.

GTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTA  >  CP000731/16918‑17082

atctacCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCa                                                                            >  2:1878464‑M2/7‑91 (MQ=255)

atctacCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCa                                                                            >  1:1608744‑M2/7‑91 (MQ=255)

 tctacCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCaa                                                                           >  2:1237158‑M2/6‑91 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATCGCTCAATGCATATCTTAGATAGTAGCCGACG                                                                         <  1:5451013‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  1:5533377‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  2:1571947‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  1:2485346‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  2:1500855‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  1:3846009‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         >  1:3893456‑M2/1‑91 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  1:4760405‑M2/91‑1 (MQ=255)

   gATCGTTGAATGATGAACGTTTACACCACGTACTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                                                                         <  1:5712435‑M2/91‑1 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        >  2:4578594‑M2/1‑91 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        <  1:490117‑M2/91‑1 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        <  1:3531291‑M2/91‑1 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        <  2:153379‑M2/91‑1 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        <  1:78148‑M2/91‑1 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        >  2:3003041‑M2/1‑91 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        >  2:2353277‑M2/1‑91 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        <  1:2230852‑M2/91‑1 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        >  1:2205917‑M2/1‑91 (MQ=255)

    aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                                                                        <  1:1942088‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACGCCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  2:5769054‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCCGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:809518‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:560724‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  1:1294947‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  2:2900632‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  1:4992909‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:634345‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  1:4703323‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  1:4568620‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  1:878162‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  2:467250‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:2185039‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:4751924‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  1:3801168‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  1:247205‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  1:2595716‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  2:1646802‑M2/1‑91 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:1831550‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       <  2:3370664‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAACGCATATCTTAGATAGTAGCCAACGGC                                                                       <  1:4485639‑M2/91‑1 (MQ=255)

     tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATAGCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                                                                       >  2:3742457‑M2/1‑91 (MQ=255)

     gaaatattaagagaacgtggtgtaaACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGc                                                                       >  1:1814869‑M2/26‑91 (MQ=255)

      cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                                                                      >  2:2214247‑M2/1‑91 (MQ=255)

      cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                                                                      <  2:866877‑M2/91‑1 (MQ=255)

      cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                                                                      >  1:4401734‑M2/1‑91 (MQ=255)

      cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                                                                      >  1:3119815‑M2/1‑91 (MQ=255)

       gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATTACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA                                                                     >  2:5402060‑M2/1‑91 (MQ=255)

       gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA                                                                     <  1:1490489‑M2/91‑1 (MQ=255)

       gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA                                                                     <  2:4376868‑M2/91‑1 (MQ=255)

       gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA                                                                     >  2:1313103‑M2/1‑91 (MQ=255)

       gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA                                                                     <  2:2844472‑M2/91‑1 (MQ=255)

        ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                    <  1:2157412‑M2/91‑1 (MQ=255)

        ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                    >  1:2708647‑M2/1‑91 (MQ=255)

        ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                    >  1:292509‑M2/1‑91 (MQ=255)

         TGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACa                                                                   >  2:405661‑M2/1‑91 (MQ=255)

         TGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACa                                                                   >  1:1134044‑M2/1‑91 (MQ=255)

         TGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACa                                                                   >  2:21134‑M2/1‑91 (MQ=255)

         TGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACa                                                                   >  2:2537961‑M2/1‑91 (MQ=255)

         TGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACa                                                                   <  1:3022291‑M2/91‑1 (MQ=255)

          GAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAg                                                                  >  2:247516‑M2/1‑91 (MQ=255)

          GAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAg                                                                  >  1:132734‑M2/1‑91 (MQ=255)

             aagagaacgtggtgtaaACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGa                                                               >  1:3411715‑M2/18‑91 (MQ=255)

               gagaacgtggtgtaaACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATa                                                             >  1:2009343‑M2/16‑91 (MQ=255)

                    cgtggtgtaaACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATc                                                        >  2:1788046‑M2/11‑91 (MQ=255)

                      tggtgtaaACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCt                                                      >  2:3265900‑M2/9‑91 (MQ=255)

                       ggtgtaaACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCtt                                                     >  2:3890593‑M2/8‑91 (MQ=255)

                        gtgtaaACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTg                                                    >  2:3143625‑M2/7‑91 (MQ=255)

                             cacGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagc                                               >  2:1627471‑M2/1‑70 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCcttgtttacc                                              >  1:583218‑M2/1‑87 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                                              >  2:5154663‑M2/1‑91 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                                              <  2:3474999‑M2/91‑1 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                                              >  2:1126650‑M2/1‑91 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                                              <  2:1972481‑M2/91‑1 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                                              >  1:1196124‑M2/1‑91 (MQ=255)

                              ACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                                              <  1:5087604‑M2/91‑1 (MQ=255)

                                GTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATCTCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                            >  2:4975279‑M2/1‑91 (MQ=255)

                                GTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                            <  1:559851‑M2/91‑1 (MQ=255)

                                GTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                            <  1:2807476‑M2/91‑1 (MQ=255)

                                GTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                            <  1:289346‑M2/91‑1 (MQ=255)

                                GTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                            >  1:4044846‑M2/1‑91 (MQ=255)

                                GTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                            >  2:3621115‑M2/1‑91 (MQ=255)

                                 ttCTCTTAATATTTCAGATATATCACGATAGATCAATGAATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatc                                           >  2:5035189‑M2/1‑66 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCt                                                      >  1:1706274‑M2/1‑80 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGt                                           <  2:4617748‑M2/91‑1 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGt                                           <  1:3819571‑M2/91‑1 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGt                                           <  2:1447472‑M2/91‑1 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGt                                           <  2:736461‑M2/91‑1 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGt                                           <  1:5343074‑M2/91‑1 (MQ=255)

                                 TTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATACTTGTTAAATTGt                                           >  1:417041‑M2/1‑91 (MQ=255)

                                  TCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGtt                                          >  1:1366917‑M2/1‑91 (MQ=255)

                                  TCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGtt                                          <  2:5277682‑M2/91‑1 (MQ=255)

                                  TCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGATAAATTGtt                                          >  2:5543659‑M2/1‑91 (MQ=255)

                                   CTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt                                         >  2:2050436‑M2/1‑91 (MQ=255)

                                   CTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt                                         <  1:4250907‑M2/91‑1 (MQ=255)

                                   CTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt                                         >  1:3256716‑M2/1‑91 (MQ=255)

                                   CTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt                                         <  2:4102198‑M2/91‑1 (MQ=255)

                                                                cTCAATGCATATCTTAGATAGTAGCCAACGGCTACtatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgttg            <  2:4545289‑M2/91‑57 (MQ=255)

                                                                          atCTTAGATAGTAGCCAACGGCTACtatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgtt  <  1:3732927‑M2/91‑67 (MQ=255)

GTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTA  >  CP000731/16918‑17082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.