BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	221178 =	264 (0.880)	17 (0.060)	10/146	NT	6.7%	intergenic (‑224/+50)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component
*	?	USA300TCH1516_ALE	221218 =	236 (0.870)	17 (0.060)	10/146	NT	6.7%	intergenic (‑264/+10)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component

Only 100 of 366 total aligned reads displayed.

AAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTCC  >  USA300TCH1516_ALE/221128‑221308

  ggggAGATCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTGACCTTATGAAGGTATACGCACCTGTTtata                                                                                          <  1:4657847/91‑1 (MQ=255)

  ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata                                                                                          >  1:1648770/1‑91 (MQ=255)

   gggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAg                                                                                         >  1:254614/1‑91 (MQ=255)

    ggAGAGCGAACGATCAATGATGCTGCAAAATACAATAGCAATGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCATCTGTTTATAGt                                                                                        <  2:5835498/91‑1 (MQ=255)

     gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                                       <  2:1802437/91‑1 (MQ=255)

     aagagagAACTAGAAATGATGCTGCAAAATAAAAAAAAAAAAAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                                       <  2:1280270/90‑1 (MQ=255)

      agagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTaa                                                                                      <  2:2863931/91‑1 (MQ=255)

      agagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTaa                                                                                      <  1:4758844/91‑1 (MQ=255)

      agagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTaa                                                                                      <  1:5247654/91‑1 (MQ=255)

       gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg                                                                                     >  2:813309/1‑91 (MQ=255)

          cGAACTAGCAATGGTGCTGCAAAATACAATAGCAAAGAAAAAACATGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCat                                                                                  <  2:5224088/91‑1 (MQ=255)

           gAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatt                                                                                 <  1:2074804/91‑1 (MQ=255)

            aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                                <  1:1275375/91‑1 (MQ=255)

            aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                                >  2:538414/1‑91 (MQ=255)

               tATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTAttt                                                                             <  1:247852/91‑1 (MQ=255)

                 tCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAg                                                                           >  2:3320792/1‑91 (MQ=255)

                   aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt                                                                         >  1:3646285/1‑91 (MQ=255)

                     tgatgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTc                                                                       <  2:93285/91‑1 (MQ=255)

                        tgctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa                                                                    <  2:4575256/91‑1 (MQ=255)

                         gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat                                                                   <  1:146899/91‑1 (MQ=255)

                          ctgcAAAATACAATAGCAAAGATAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAacta                                                                  >  2:4478397/1‑91 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  <  2:1428817/91‑1 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  >  2:4831042/1‑91 (MQ=255)

                           tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa                                                                 <  1:4057274/91‑1 (MQ=255)

                            gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat                                                                <  2:3240230/91‑1 (MQ=255)

                            gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat                                                                >  1:2312057/1‑91 (MQ=255)

                             cAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAAtt                                                               >  1:2145153/1‑91 (MQ=255)

                               aaaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGa                                                             <  1:2752378/91‑1 (MQ=255)

                                aaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGAt                                                            >  2:732185/1‑91 (MQ=255)

                                   aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc                                                         <  1:1211144/91‑1 (MQ=255)

                                   aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc                                                         >  2:1578461/1‑91 (MQ=255)

                                   aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc                                                         <  1:4484607/91‑1 (MQ=255)

                                    cAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGcc                                                        >  1:3991291/1‑91 (MQ=255)

                                    cAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGcc                                                        >  1:3382193/1‑91 (MQ=255)

                                    cAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATATAGCTTCAAATAATTGATCGcc                                                        >  2:4110706/1‑91 (MQ=255)

                                     aaTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCa                                                       >  1:4184557/1‑91 (MQ=255)

                                     aaTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCa                                                       >  1:2956415/1‑91 (MQ=255)

                                      aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa                                                      >  1:3780438/1‑91 (MQ=255)

                                      aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa                                                      >  1:5006214/1‑91 (MQ=255)

                                       tAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaa                                                     >  1:2567878/1‑91 (MQ=255)

                                        aGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaat                                                    <  1:3279373/91‑1 (MQ=255)

                                         gCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatg                                                   >  2:239247/1‑91 (MQ=255)

                                             aGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat                                               <  2:105025/91‑1 (MQ=255)

                                                aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt                                            <  1:3736684/91‑1 (MQ=255)

                                                  AAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc                                          >  1:3910312‑M1/1‑91 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  1:5634166‑M1/91‑1 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  1:886040‑M1/91‑1 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  1:3500361‑M1/91‑1 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  2:5458814‑M1/91‑1 (MQ=255)

                                                    acaggtgcgtataccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCa                                        >  1:5465901‑M2/39‑91 (MQ=255)

                                                    ACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCa                                        >  1:4283953‑M1/1‑91 (MQ=255)

                                                     caggtgcgtataccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                                       >  2:3619813‑M2/38‑91 (MQ=255)

                                                        GCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGtt                                    <  1:589874‑M1/91‑1 (MQ=255)

                                                        GCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGtt                                    >  2:550706‑M1/1‑91 (MQ=255)

                                                        GCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGtt                                    <  2:2089413‑M1/91‑1 (MQ=255)

                                                         cgcgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTc                                   <  1:2267890/91‑1 (MQ=255)

                                                         cgcgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTc                                   >  2:3958772/1‑91 (MQ=255)

                                                           cgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAc                                 >  1:2782706/1‑91 (MQ=255)

                                                           cgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAc                                 <  2:5549735/91‑1 (MQ=255)

                                                           cgTCAACTTATGAAGGTATACGCACCTGCTTATCGTAAGCCTTATTTAGCTTTAAATAATTGACCGCCAAATGAAATGTTGCCATGTTCaa                                 <  2:1745076/91‑2 (MQ=255)

                                                            gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                <  1:1031682/91‑1 (MQ=255)

                                                            atCACCTTATGAAGGTATACGCACCTGTTTATAGTAAACATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                <  2:4279583/90‑1 (MQ=255)

                                                             tataccttcataaggtgacgcgactgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGTCAAATGAAATGTTGCTATGTTAACCt                               >  2:1489437‑M2/30‑91 (MQ=255)

                                                             tCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCt                               <  1:2654738/91‑1 (MQ=255)

                                                             tCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCt                               <  2:1125536/91‑1 (MQ=255)

                                                               taccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTg                             >  1:1793372‑M2/28‑91 (MQ=255)

                                                               aCCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTg                             >  2:3056960/1‑91 (MQ=255)

                                                                 ccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           >  2:2446592‑M2/26‑91 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           <  1:2398613/91‑1 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           >  1:3200129/1‑91 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           >  1:2585740/1‑91 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           <  2:3500841/91‑1 (MQ=255)

                                                                   tATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTa                         >  1:4363173/1‑91 (MQ=255)

                                                                    aTGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaa                        <  2:1236820/91‑1 (MQ=255)

                                                                     tGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaa                       >  2:229724/1‑91 (MQ=255)

                                                                      gAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  1:5521554/91‑1 (MQ=255)

                                                                      gAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      >  1:3583232/1‑91 (MQ=255)

                                                                      gAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  2:2163951/91‑1 (MQ=255)

                                                                       aaGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAAt                     <  2:2704116/91‑1 (MQ=255)

                                                                       aaGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAAt                     <  2:2253412/91‑1 (MQ=255)

                                                                        aGGTATACGCACCTGTTAATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATc                    >  1:4446949/1‑91 (MQ=255)

                                                                         ggTATACGCACCTGTTTCTAGTAAGCATTATTTAGATTCAAATAATTGATCTCTAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCa                   >  2:4729281/1‑91 (MQ=255)

                                                                         ggTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCa                   >  1:943408/1‑91 (MQ=255)

                                                                         ggTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCa                   <  1:2711750/91‑1 (MQ=255)

                                                                            ataCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAgg                <  1:3016859/91‑1 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             <  2:3671428/91‑1 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             >  1:638046/1‑91 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             <  2:656224/91‑1 (MQ=255)

                                                                                gCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTg            >  1:1858088/1‑91 (MQ=255)

                                                                                  aCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTa          <  2:2550436/91‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  1:1998536‑M2/84‑1 (MQ=255)

                                                                                    ctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAAt        >  2:1350906‑M2/7‑91 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       <  1:4855902‑M2/86‑1 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       <  2:3285408‑M2/86‑1 (MQ=255)

                                                                                      gtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCACGGTTTGTAATGt      >  2:3744031‑M2/5‑91 (MQ=255)

                                                                                      gtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGt      >  1:681341‑M2/5‑91 (MQ=255)

                                                                                       tttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGtt     >  2:3453933‑M2/4‑91 (MQ=255)

                                                                                         tATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTc   >  2:5094989‑M2/2‑91 (MQ=255)

                                                                                         tATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTc   <  2:2001929‑M2/90‑1 (MQ=255)

                                                                                          ataGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTcc  >  2:5710882/1‑91 (MQ=255)

AAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTCC  >  USA300TCH1516_ALE/221128‑221308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.