| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1426794 | NA (NA) | 10 (0.040) | 5/146 | NT | NA | intergenic (‑525/+447) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B |
| ? | USA300TCH1516_ALE | 1443594 = | NA (NA) | intergenic (‑167/+186) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
Only 100 of 218 total aligned reads displayed.
GAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCA > USA300TCH1516_ALE/1443505‑1443665 | gAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATg < 2:2716424/91‑1 (MQ=39) aTTTTACATTTATGTGCAAGTTGGGCTAAGTGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACACGTTATTACGTTGTATTAATGGc > 2:2521578/1‑91 (MQ=14) ttttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCg < 2:3701260/91‑1 (MQ=37) tttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCga < 1:3108431/91‑1 (MQ=39) ttACATTTATGTGCAAGTTGGGCACTGTGTCTTATTTTTTTAAAGTAATTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgaa > 1:2070325/1‑90 (MQ=14) ttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgag > 1:3720314/1‑91 (MQ=39) ttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgag < 2:3246615/91‑1 (MQ=39) ttACATTGATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAACTACACGTTAATACGTAGTATTAATGGCgag < 1:4656475/91‑1 (MQ=255) tACATTTATGTGCAAGTTGGGCAACGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgaga < 1:5552534/91‑1 (MQ=255) tACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgaga > 2:4126181/1‑91 (MQ=39) tACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgaga < 1:3950698/91‑1 (MQ=39) tACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCgaga < 2:5114429/91‑1 (MQ=39) aCATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGAc > 2:29694/1‑91 (MQ=39) aCATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGAc > 1:1364819/1‑91 (MQ=39) aTTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTc < 2:3158111/91‑1 (MQ=37) aTTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTc < 1:381122/91‑1 (MQ=38) tttATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTcc > 2:3663546/1‑91 (MQ=39) aTGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTCATACGTAGTATTAATGGCGAGACTCCTGa > 1:5177073/1‑91 (MQ=255) aTGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGa < 2:3627959/91‑1 (MQ=39) tgtgCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAg < 2:4303843/91‑1 (MQ=39) gtgCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAgg > 2:20060/1‑91 (MQ=39) gtgCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAgg < 2:548947/91‑1 (MQ=38) cAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATCCGTAGTATTAATGGCGAGACTCCTGagagag > 1:5434355/1‑91 (MQ=255) cAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGCGGGAg > 2:1673007/1‑91 (MQ=21) cAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAg > 1:3727531/1‑91 (MQ=35) cAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAg > 2:1495661/1‑91 (MQ=35) gcaggggAAAGTGTCTTACTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAg < 1:4891115/88‑1 (MQ=255) tGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTg < 2:2560330/91‑1 (MQ=34) tGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTg < 1:966671/91‑1 (MQ=33) tGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTg < 2:5359702/91‑1 (MQ=34) tGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTg < 1:4161474/91‑1 (MQ=34) gggCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGc < 1:333865/91‑1 (MQ=34) ggCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGcc > 2:1017545/1‑91 (MQ=34) ggCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGcc > 2:5599650/1‑91 (MQ=34) ggCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGcc < 2:4571871/91‑1 (MQ=34) ggCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGcc > 2:2329360/1‑91 (MQ=34) ggCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGcc > 1:2164638/1‑91 (MQ=34) gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCa > 2:477927/1‑91 (MQ=34) gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCa > 2:71754/1‑91 (MQ=34) gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCa > 2:1965579/1‑91 (MQ=34) gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCa > 1:5531882/1‑91 (MQ=34) gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCa < 1:4695503/91‑1 (MQ=34) gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCa > 1:355240/1‑91 (MQ=34) cAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAg > 2:1914526/1‑91 (MQ=34) cAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAg > 1:3989472/1‑91 (MQ=34) aaaGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGt < 1:3533489/91‑1 (MQ=34) aaGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTc > 1:184356/1‑91 (MQ=34) aaGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTc < 1:1758361/91‑1 (MQ=34) aGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCg < 2:5005488/91‑1 (MQ=34) gtgtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa < 2:2757761/91‑1 (MQ=34) gtgtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa > 1:4313747/1‑91 (MQ=34) tCTTATTTTTTTAAAGTATTTCAAATTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGa < 2:5437909/91‑1 (MQ=21) tCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGa > 2:449406/1‑91 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 1:1675616/1‑91 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 1:4251492/1‑91 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 1:1393662/1‑91 (MQ=34) ttATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAcc > 1:574601/1‑91 (MQ=34) tATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCg > 1:2366051/1‑91 (MQ=34) ttttttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAgg < 1:2245648/91‑1 (MQ=33) ttttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAGTGGCGAGACTCCTCAGGGAGCAGTGCCAGTCGAAGACCGAGGCt > 2:4814719/1‑91 (MQ=255) tttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa > 1:4809028/1‑79 (MQ=35) ttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTga < 1:5139775/91‑1 (MQ=34) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag > 1:4951418/1‑91 (MQ=34) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag > 2:2446827/1‑91 (MQ=34) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag > 2:4136290/1‑91 (MQ=34) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag < 2:5816360/91‑1 (MQ=34) aaaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgaga < 2:335849/91‑1 (MQ=33) aaaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgaga > 1:4550974/1‑91 (MQ=34) aaaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTga > 2:1765941/1‑89 (MQ=35) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc < 1:2193092/91‑1 (MQ=33) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc < 1:2485065/91‑1 (MQ=33) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 1:5477268/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 1:5085451/1‑91 (MQ=34) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCGGTGCCAGTCGAAGACCGAGGCTGAGACg < 1:2955679/91‑1 (MQ=18) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg < 2:1150732/91‑1 (MQ=34) gTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACgg > 2:2469121/1‑91 (MQ=34) gTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACgg < 2:1393662/91‑1 (MQ=34) gTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACgg > 1:684093/1‑91 (MQ=34) aTTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCa < 1:1091662/91‑1 (MQ=34) tttCAAAGTAAAACTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAc < 1:628306/91‑1 (MQ=21) tCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAccc > 1:462462/1‑91 (MQ=33) aaaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTa > 2:2323532/1‑91 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg > 1:5327697/1‑91 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGTGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 2:3954104/91‑1 (MQ=18) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg > 2:4614783/1‑91 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 2:488497/91‑1 (MQ=33) tAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaa < 2:5198635/91‑1 (MQ=34) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa > 2:5553364/1‑91 (MQ=33) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa > 1:852147/1‑91 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCTGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc < 1:4042149/91‑1 (MQ=21) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc < 2:223140/91‑1 (MQ=34) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg > 2:820554/1‑91 (MQ=34) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg < 1:1495661/91‑1 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa < 2:2178200/91‑1 (MQ=34) acacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg < 2:5080549/91‑1 (MQ=33) cacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGc > 1:1223457/1‑91 (MQ=33) cacGTTAATACGGAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGc < 2:3871877/91‑1 (MQ=18) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 2:4841868/1‑91 (MQ=32) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 1:1002642/1‑91 (MQ=32) cGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCa > 2:1598838/1‑91 (MQ=31) | GAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCA > USA300TCH1516_ALE/1443505‑1443665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |